View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_high_24 (Length: 227)
Name: NF20257_high_24
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_high_24 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28339114 - 28339340
Alignment:
| Q |
1 |
aaaaacagaagagactgtatgtttctcattcttaacaaaactatccagaaaagacctaactttagaatacctttttgaatttgctagaaaatgtaaaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28339114 |
aaaaacagaagagactgtatgtttctcattcttaacaaaactatccagaaaagacctaactttagaatacctttttgaatttgctagaaaatgtaaaact |
28339213 |
T |
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| Q |
101 |
ttggaagttggttcaagaccatatgaaagtctgtactctttctgagaccacttaaagaaccttaaaacaagctctgaatcgactccggcattgagcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28339214 |
ttggaagttggttcaagaccatatgaaagtctgtactctttctgagaccacttaaagaaccttaaaacaagctctgaatcgactccggcattgagcaatt |
28339313 |
T |
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| Q |
201 |
gatcaagaaatgtcgaaggtttggtta |
227 |
Q |
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|||| | |||||||| ||||||||||| |
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| T |
28339314 |
gatctataaatgtcgcaggtttggtta |
28339340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 44790312 - 44790538
Alignment:
| Q |
1 |
aaaaacagaagagactgtatgtttctcattcttaacaaaactatccagaaaagacctaactttagaatacctttttgaatttgctagaaaatgtaaaact |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44790312 |
aaaaacagaagagactgtatgtttctcattcttaacaaaactatccagaaaagacctaactttagaatacctttttgaatttgctagaaaatgtaaaact |
44790411 |
T |
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| Q |
101 |
ttggaagttggttcaagaccatatgaaagtctgtactctttctgagaccacttaaagaaccttaaaacaagctctgaatcgactccggcattgagcaatt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44790412 |
ttggaagttggttcaagaccatatgaaagtcggtactctttctgagaccacttaaagaaccttaaaacaagctctgaatcgactccggcattgagcaatt |
44790511 |
T |
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| Q |
201 |
gatcaagaaatgtcgaaggtttggtta |
227 |
Q |
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|||| |||||||||| ||||||||||| |
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| T |
44790512 |
gatctagaaatgtcgcaggtttggtta |
44790538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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