View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20257_high_3 (Length: 458)
Name: NF20257_high_3
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 451
Target Start/End: Original strand, 51209858 - 51210294
Alignment:
| Q |
15 |
actttggattatcagaaccccttccgtgaaaaccggatgacttagatnnnnnnnnnnnnncctccaactgttgttattttagtggatggtgtgtagtact |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51209858 |
actttggattatcagaaccccttctgtgaaaaccggaggatttagatacacaaaaaaaaacctccaactgttgttattttagtggatggtgtgtagtact |
51209957 |
T |
|
| Q |
115 |
ttaaatataaatatatattccttataatatgaaataggtaatgttgttccatggtgcatttaaaccatacatgatttgatagctttggcaatgagcatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51209958 |
ttaaatataaatatatattccttataatatgaaataggtaatgttgttccatggtgcatttaaaccatacatgatttgatagctttggcaatgagcatct |
51210057 |
T |
|
| Q |
215 |
aattctgtattattcttttgctttatctcatgatttaaagatagtgaagttagcttgcaatgctaggctactgccaagtgttccatcaaccttcattctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51210058 |
aattctgtattattcttttgctttatctcatgatttaaagatagtgaagttagcttgcaatgctaggctactgccaagtgttccatcaaccttcattctt |
51210157 |
T |
|
| Q |
315 |
atagttcccttcattcttctgttgctttctagacaagaagcatatctacatcaagtttgcattaaggtttgattcttgtttttctacttaccctgctaac |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51210158 |
atagttcccttcattcttctgttgctttctagacaagaagcatatctacatcaagtttgcattaaggtttgattcttgtttttctacttaccctgctaac |
51210257 |
T |
|
| Q |
415 |
tatttttatctatcactctttaattctcattcatctc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51210258 |
tatttttatctatcactctttaattctcattcatctc |
51210294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 342
Target Start/End: Complemental strand, 49739712 - 49739557
Alignment:
| Q |
194 |
tagctttggcaatgagcatctaattctgta----ttattcttttgctttatctcatgatttaaagatagtgaagttagcttgcaatgctaggctactgcc |
289 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||||||| |||||||||| || ||||||||| || | ||||||||||||||| || ||| |||| |
|
|
| T |
49739712 |
tagctttggtaatgagcatcttgttctgtaatatatattcttctgctttatcttatagtttaaagatggtcaggttagcttgcaatgcaagcctattgcc |
49739613 |
T |
|
| Q |
290 |
aagtgttccatcaacct---tcattcttatagttcccttcattcttctgttgcttt |
342 |
Q |
| |
|
|| ||||||||||| || | ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
49739612 |
aactgttccatcaaactttgtagttcttatagtttccttcattcttttgttgcttt |
49739557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University