View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_low_11 (Length: 326)
Name: NF20257_low_11
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_11 |
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| [»] scaffold0086 (1 HSPs) |
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| [»] scaffold0429 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 29060 - 29376
Alignment:
| Q |
1 |
ccttaacatatcaactactaacattagcctgaaaaataatcatcaattatgctattgattcagcagatgctccttttactnnnnnnngactcaaagattt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |
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| T |
29060 |
ccttaacatatcaactactaacatttgcctgaaaaataatcatcaattatgctattgattcagcagatgctccttttactaaaaaaagattcaatgattt |
29159 |
T |
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| Q |
101 |
agacattaagtagctgcagcatagatatagcagaccaaaatgacattatatttgcgcttaaattatattcaaaagacataatatttgaagaaagattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29160 |
agacattaagtagctgcagcatagatatagcagatcaaaatgacattatatttgcgcttaaattatattcaaatgacataatatttgaagaaagattgaa |
29259 |
T |
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| Q |
201 |
tcctagataagtattactattctgaaaatgtagcataatagaaataatttaaagattgtcatttccccaactttcttttttagtgacagtaacatgacct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29260 |
tcctagataagtattactattctgaaaatgtagcataatagaaataatttaaagatcgtcatttccccaactttcttttttagtgacagtaacatgacct |
29359 |
T |
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| Q |
301 |
acaaattaaagtattat |
317 |
Q |
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||||||||||||||||| |
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| T |
29360 |
acaaattaaagtattat |
29376 |
T |
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Target: scaffold0429 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 9897 - 9830
Alignment:
| Q |
4 |
taacatatcaactactaacattagcctgaaaaataatcatcaattatgctattgattcagcagatgct |
71 |
Q |
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| T |
9897 |
taacgtatcaactattaacatttgcctcaaaaataatcatcagttatgctattgattcttcagatgct |
9830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 15712904 - 15713025
Alignment:
| Q |
196 |
ttgaatcctagataagtattactattctgaaaatgtagcataatagaaataatttaaagattgtcatttccccaactttcttttttagtgacagtaacat |
295 |
Q |
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|||||| ||||||||||| ||||||||||| | || | || ||| ||||| ||||||||| | | || ||||| |||| ||||||||| ||||||| |
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| T |
15712904 |
ttgaatgctagataagtaccactattctgaagaggttggatcatataaatagtttaaagatcatgactttcccaattttcatttttagtgtaagtaacac |
15713003 |
T |
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| Q |
296 |
gacctacaaattaaagtattat |
317 |
Q |
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| T |
15713004 |
gacctacacattgaagtattat |
15713025 |
T |
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