View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_low_14 (Length: 285)
Name: NF20257_low_14
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 5581560 - 5581829
Alignment:
| Q |
1 |
tgaaaaacttacaaagcaatcatcatcaatagtgaagatgtacttcttcttagaaaccatgtaaccaaagcaacgacatgcagagtccttgaatgaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5581560 |
tgaaaaacttacaaagcaatcatcatcaatagtgaagatgtacttcttcttagaaaccatgtaaccaaagcaacgacatgcagagtccttgaatgaaatg |
5581659 |
T |
|
| Q |
101 |
caagaagccctaggaccaagaagcttattaatatcattcctattataaagttcataatcaaaaccaggtggaaccttaatagtttttgaagggtcaccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5581660 |
caagaagccctaggaccaagaagcttattaatatcattcctattataaagttcataatcaaaaccaggtggaaccttaatagtttttgaagggtcaccat |
5581759 |
T |
|
| Q |
201 |
cttgaacaatgatcaaatgataaggttcaaaatatggcctccacatttccaagaaatcaaggttccttat |
270 |
Q |
| |
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| T |
5581760 |
cttgaacaatgatcaaatgataaggttcaaaatatggcctccacatttccaagaaatcaaggttccttat |
5581829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 3 - 270
Target Start/End: Original strand, 5019879 - 5020146
Alignment:
| Q |
3 |
aaaaacttacaaagcaatcatcatcaatagtgaagatgtacttcttcttagaaaccatgtaaccaaagcaacgacatgcagagtccttgaatgaaatgca |
102 |
Q |
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||||||| |||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || || |
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| T |
5019879 |
aaaaactcacaaagcaatcatcatcaatggtatagatatacttcttcttagaaaccatataaccaaagcaacgacatgcagaatccttgaatgagataca |
5019978 |
T |
|
| Q |
103 |
agaagccctaggaccaagaagcttattaatatcattcctattataaagttcataatcaaaaccaggtggaaccttaatagtttttgaagggtcaccatct |
202 |
Q |
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| T |
5019979 |
gctagcttttggaccaagaatcctgttaatatcattacggttataaagctcataatcaaaaccttgaggaacattgatggtttttgaagggtcaccatct |
5020078 |
T |
|
| Q |
203 |
tgaacaatgatcaaatgataaggttcaaaatatggcctccacatttccaagaaatcaaggttccttat |
270 |
Q |
| |
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| T |
5020079 |
tgaacaatgatgagatgataaggctcaaagaatggcctccacatctctaagaaatcaaggtttcttat |
5020146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 25635819 - 25636073
Alignment:
| Q |
10 |
tacaaagcaatcatcatcaatagtgaagatgtacttcttcttagaaaccatgtaaccaaagcaacgacatgcagagtccttgaatgaaatgcaagaagcc |
109 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
25635819 |
tacaaagcaatcatcatcaatagtaaagatatacttcttctttgaaacaatgaaaccaaagcaacgacaagcagagtctttgaatgaaatgcaagaagcc |
25635918 |
T |
|
| Q |
110 |
ctaggaccaagaagcttattaatatcattcctattataaagttcataatcaaaaccaggtggaaccttaatagtttttgaagggtcaccatcttgaacaa |
209 |
Q |
| |
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||||||| | || |||||||| || | |||||||||||||| ||||| || || || || || ||||||||| |||||||||||||||| |
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| T |
25635919 |
ttaggacccaaaattcggttaatatcgttacggttataaagttcatagtcaaatccttcagggactttgatgacttttgaaggatcaccatcttgaacaa |
25636018 |
T |
|
| Q |
210 |
tgatcaaatgataaggttcaaaatatggcctccacatttccaagaaatcaaggtt |
264 |
Q |
| |
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|||| | ||||||||||| ||| || | |||||| |||||||||||| ||||| |
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| T |
25636019 |
tgatgagatgataaggttgaaagaattgtctccactgttccaagaaatcgaggtt |
25636073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 20177141 - 20176881
Alignment:
| Q |
4 |
aaaacttacaaagcaatcatcatcaatagtgaagatgtacttcttcttagaaaccatgtaaccaaagcaacgacatgcagagtccttgaatgaaatgcaa |
103 |
Q |
| |
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||||||||||||||||||||||||||| || | || |||||||||||||||||||| ||||||||||||||||| ||||| ||||| || || || ||| |
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| T |
20177141 |
aaaacttacaaagcaatcatcatcaatggtataaatatacttcttcttagaaaccatataaccaaagcaacgacaagcagaatccttaaaggagatacaa |
20177042 |
T |
|
| Q |
104 |
gaagccctaggaccaagaagcttattaatatcattcctattataaagttcataatcaaaaccaggtggaaccttaatagtttttgaagggtcaccatctt |
203 |
Q |
| |
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||||| ||||||| | | | |||| |||||||| | ||| ||||| || ||||| ||||| | ||||| || || |||||||||||||||||||| |
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| T |
20177041 |
gaagctttaggacccaagatcctattgatatcattacgattgtaaagctcgtaatcgaaaccttgaggaactttgatgacttttgaagggtcaccatctt |
20176942 |
T |
|
| Q |
204 |
gaacaatgatcaaatgataaggttcaaaatatggcctccacatttccaagaaatcaaggtt |
264 |
Q |
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|||||||||| | |||||| |||| ||| | || |||||||| || | |||||| ||||| |
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| T |
20176941 |
gaacaatgatgagatgatattgttcgaaaaagggtctccacatctcgaggaaatcgaggtt |
20176881 |
T |
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