View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_low_15 (Length: 272)
Name: NF20257_low_15
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 403244 - 403495
Alignment:
| Q |
1 |
aagtcttgctgtgtatgttcaagcaacctcctaatctctctttttcgattcaacatcattgttagcacgagcaatcaccgctattctggaataatagcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
403244 |
aagtcttgctgtgtatgttcaagcaacctcctaatctctctttttcgattcaacatcattgctagcacgagcaatcaccgctattctggaataatagcta |
403343 |
T |
|
| Q |
101 |
gtaatattcctcaatggtcgatgttatatacaagtgttggcacatgcagttactccaaaatttgtgcctgcgatatatataatagctactaattttgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
403344 |
ctaatattcctcaatggtcgatgttatatacaagtattggcacattcagttactccaaaatttgtgcctgtg--atatataatagctactaattttgtta |
403441 |
T |
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| Q |
201 |
tacatgtatgtgcctggttacaa-tagctgtaagcaaactatatattaaccaaatact |
257 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
403442 |
tac----atgtgcctggttacaattagctgtaagcaaactatatattaaccaaatact |
403495 |
T |
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