View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20257_low_2 (Length: 492)
Name: NF20257_low_2
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 41706741 - 41706276
Alignment:
| Q |
19 |
agtacgacattagctaaagagttctttgcaaatgcatatcagggccctgctaagaatgagcgaatgaaattcactagttttatcagagggaagaatgttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41706741 |
agtacgacattagctaaagagttctttgcaaatgcatatcagggccctgctaagaatgagcgaatgaaattcactagttttatcagagggaagaatgttc |
41706642 |
T |
|
| Q |
119 |
catttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtgttcctttgaagcaagaaaggccaagggttctaacattgatcatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41706641 |
catttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtgttcctttgaagcaagaaaggccaagggttctaacattgatcatca |
41706542 |
T |
|
| Q |
219 |
ggagattcgtagtactctgtgtaggcccgaggccgattgggttaggaacaaagacggaacaccgacaaaacttcgcacttctgacctcacaccccttgct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41706541 |
ggagattcgtagtactctgtgtaggcccgaggccgattgggttaggaacaaagacggaacaccgacaaaacttcgcacttctgacctcacaccccttgct |
41706442 |
T |
|
| Q |
319 |
aaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcagacttgaccattctaaaagcaaacttgctgacagcaatccttaagg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41706441 |
aaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcagacttgaccattctaaaagcaaacttgctgacagcaatccttaagg |
41706342 |
T |
|
| Q |
419 |
gtgaaccagtcaatgttggtcgtctcctagcagatgacctttgggtcacagccaattgttcttctc |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41706341 |
gtgaaccagtcaatgttggtcgtctcctagcagatgacctttgggtcacagccaattgttcttctc |
41706276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 490
Target Start/End: Complemental strand, 41716544 - 41716073
Alignment:
| Q |
19 |
agtacgacattagctaaagagttctttgcaaatgcatatcagggccctgctaagaatgagcgaatgaaattcactagttttatcagagggaagaatgttc |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
41716544 |
agtacgacaatagctaaagagttctttgcaaatgcatatcagggtcctgctaagaatgatcgaatgaaattcactagttttgtcagagggaagaaggttc |
41716445 |
T |
|
| Q |
119 |
catttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtgttcctttgaagcaagaaaggccaagggttctaacattgatcatca |
218 |
Q |
| |
|
||||||||||||| ||||||||| || ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
41716444 |
catttcatgataaaattatcaatcaaatgtttaggcttgagaactatgagaagtgttcatttgaagcaagaaaggccaagggttctaacgttgatcatca |
41716345 |
T |
|
| Q |
219 |
ggagattcgtagtactctgtgtaggcccgaggccgattgggttaggaacaaagacggaacaccgacaaaacttcgcacttctgacctcacaccccttgct |
318 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| | ||||||||| ||| ||||| |
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|
| T |
41716344 |
ggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaagatggaacaccagcaaaacttcgcacgtgtgacctcactcccgttgct |
41716245 |
T |
|
| Q |
319 |
aaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcagacttgaccattctaaaagcaaacttgctgacagcaatccttaagg |
418 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
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|
| T |
41716244 |
aaagtatgggcaatgtttgttttgcgcaccttgctcccatgttcaaatagatcagacttgaccattctaaaagctaacttactgactgcaatccttaagg |
41716145 |
T |
|
| Q |
419 |
gtgaaccagtcaatgttggtcgtctcctagcagatgacctttgggtcacagccaattgttcttctctctcga |
490 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||| ||||| |
|
|
| T |
41716144 |
gtgagccagtcaatgttggtcgtctcctagcaaatgacatttgggtcacagcaaattgtgcttctccctcga |
41716073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 82 - 484
Target Start/End: Complemental strand, 41665447 - 41665045
Alignment:
| Q |
82 |
atgaaattcactagttttatcagagggaagaatgttccatttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtgttcctttg |
181 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| || ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41665447 |
atgaaattcactagttttgtgagagggaagaaggtgccatttcatgagaaaattatcaatcaattgtttgggcttgagaactatgagcagtgttcgtttg |
41665348 |
T |
|
| Q |
182 |
aagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactctgtgtaggcccgaggccgattgggttaggaacaaagacggaacacc |
281 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
41665347 |
aagcaagaaagaccaagggctctaacattgatcatcaggagattcgtagcactctgtgcaggcccgaggctgattgggttaggagaaaagatggaacacc |
41665248 |
T |
|
| Q |
282 |
gacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcagacttgacc |
381 |
Q |
| |
|
||| ||| | ||||||||||||||||||| ||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41665247 |
atcaagactccacacttctgacctcacacccattgctaaagcatgggcaacatttattttgcgaaccttgctcccgtgttcaaatgtgtcagacttgacc |
41665148 |
T |
|
| Q |
382 |
attctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttgggtcacagccaattgttctt |
481 |
Q |
| |
|
|||| ||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||| || ||| |||||| || ||||| | |
|
|
| T |
41665147 |
attcagaaagcaaccttgctgactgcaattcttaagggtgaaccagtcaatgtcggtcgtctcctagcaaatgatctccgggccacagcgaactgttcct |
41665048 |
T |
|
| Q |
482 |
ctc |
484 |
Q |
| |
|
||| |
|
|
| T |
41665047 |
ctc |
41665045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 69 - 467
Target Start/End: Complemental strand, 41648608 - 41648210
Alignment:
| Q |
69 |
taagaatgagcgaatgaaattcactagttttatcagagggaagaatgttccatttcatgataatattatcaatgaattgtttgggcttgagaactatgag |
168 |
Q |
| |
|
||||||||| | |||| |||||||||||||| | ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
41648608 |
taagaatgatctaatgcaattcactagttttgtgagagggaagaaggttccatttcatgataaaattatcaatcaattgtttgggcttgagaacaatgag |
41648509 |
T |
|
| Q |
169 |
cagtgttcctttgaagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactctgtgtaggcccgaggccgattgggttaggaaca |
268 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41648508 |
gagtgttcctttgaaacaagaaagaccaagggctctaacattgatcatcaggagattcacagtactctgtgtaggcccgaggccgattgggttaggaaca |
41648409 |
T |
|
| Q |
269 |
aagacggaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgt |
368 |
Q |
| |
|
| || | |||||| || ||| | ||||||| ||||||||| |||| |||| |||| ||| |||||||||| ||| || ||||| |||||||||| |
|
|
| T |
41648408 |
atgatgaaacaccattaagactccacacttctagtctcacacccattgcgaaagcatggacaacatttgttttgcatacattactcccatgttcaaatgc |
41648309 |
T |
|
| Q |
369 |
gtcagacttgaccattctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttgggtcac |
467 |
Q |
| |
|
|||||| |||||||||| ||| | | ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41648308 |
gtcagagttgaccattccgaaatcgaccttgctgactgcaatcctgaagggtgaaccaatcaatgttggtcgtctcctagcagaagacctttgggtcac |
41648210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 82 - 484
Target Start/End: Complemental strand, 41656686 - 41656284
Alignment:
| Q |
82 |
atgaaattcactagttttatcagagggaagaatgttccatttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtgttcctttg |
181 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| || ||||||||||| || ||||||||| |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
41656686 |
atgaaattcactagttttgtcagaggcaagatggtgccatttcatgagaaaattatcaatcgattgtttgggctagagaactatgagcagtgttcatttg |
41656587 |
T |
|
| Q |
182 |
aagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactctgtgtaggcccgaggccgattgggttaggaacaaagacggaacacc |
281 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
41656586 |
aagcaagaaaggcaaagggatctaacattgatcatcaggagattcttagtactctgtgcaggcccgaggccgattggattaggaagaaagatggaacacc |
41656487 |
T |
|
| Q |
282 |
gacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcagacttgacc |
381 |
Q |
| |
|
| ||||||| | |||||||||| |||||| ||||||||| ||||| || ||| |||||| ||||||||| ||| |||||||||||||||||||| || |
|
|
| T |
41656486 |
aataaaacttaactcttctgacctgacacccattgctaaagcatgggaaacatttattttgcataccttgcttccgagttcaaatgtgtcagacttgccc |
41656387 |
T |
|
| Q |
382 |
attctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttgggtcacagccaattgttctt |
481 |
Q |
| |
|
||| ||||||| |||| | || |||||||||||||| |||||||||||||| | |||||||||||| ||||||||| || |||||| || ||||| | |
|
|
| T |
41656386 |
cttcagaaagcaaccttgataactgcaatccttaagggcgaaccagtcaatgtcgtccgtctcctagcaaatgacctttcggccacagcgaactgttcct |
41656287 |
T |
|
| Q |
482 |
ctc |
484 |
Q |
| |
|
||| |
|
|
| T |
41656286 |
ctc |
41656284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 41656760 - 41656715
Alignment:
| Q |
26 |
cattagctaaagagttctttgcaaatgcatatcagggccctgctaa |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
41656760 |
cattagctaaagagttctttgcaaatgcatatctgggtcctgctaa |
41656715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 41665524 - 41665490
Alignment:
| Q |
23 |
cgacattagctaaagagttctttgcaaatgcatat |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41665524 |
cgacattagctaaagagttctttgcaaatgcatat |
41665490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 82 - 470
Target Start/End: Original strand, 2440420 - 2440811
Alignment:
| Q |
82 |
atgaaattcactagttttatcagagggaagaatgttccatttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtgttcctttg |
181 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| || |||||||| | ||| ||||||| |||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
2440420 |
atgaaattcactagttttgttagagggaagaaggtgccatttcagggaaat--tatcaatcaattgtttaggcttgagaactatgagcagtgttcatttg |
2440517 |
T |
|
| Q |
182 |
aagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactctgtgtaggcccgaggccgattgggttag-------gaacaaagacg |
274 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
2440518 |
aagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtgc--gcctgaggccgattgggttaggatttaggaacaaagacg |
2440615 |
T |
|
| Q |
275 |
gaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcaga |
374 |
Q |
| |
|
||||||| | |||||||| | || ||||||| |||||| ||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
2440616 |
gaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcaga |
2440715 |
T |
|
| Q |
375 |
cttgaccattctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctttgggtcacagc |
470 |
Q |
| |
|
||||||||||| ||||||| |||||| || |||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||| |
|
|
| T |
2440716 |
cttgaccattcagaaagcaaccttgctaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagtaaatgacctttgggccacagc |
2440811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 2440339 - 2440377
Alignment:
| Q |
19 |
agtacgacattagctaaagagttctttgcaaatgcatat |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440339 |
agtacgacattagctaaagagttctttgcaaatgcatat |
2440377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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