View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_low_20 (Length: 243)
Name: NF20257_low_20
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_20 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 41706071 - 41706299
Alignment:
| Q |
15 |
attctataattatacctcaaatattgtaaccaaggttgcgctacccgtgtagatgctatactattttacaagctacaatgggtttctatccattttgcag |
114 |
Q |
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| T |
41706071 |
attctataattatacctcaaatattgtaaccaaagttgcgctacccgtgtagatgctatactattttacaagctacaatgggtttctatccattttgcag |
41706170 |
T |
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| Q |
115 |
tgatcgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggttgatgtaact |
214 |
Q |
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| T |
41706171 |
tgatcgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggttgatgtaact |
41706270 |
T |
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| Q |
215 |
cgatggagaagaacaattggctgtgaccc |
243 |
Q |
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| T |
41706271 |
cgatggagaagaacaattggctgtgaccc |
41706299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 41715878 - 41716102
Alignment:
| Q |
19 |
tataattatacctcaaatattgtaaccaaggttgcgctacccgtgtagatgctatactattttacaagctacaatgggtttctatccattttgcagtgat |
118 |
Q |
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| T |
41715878 |
tataataatacatcaaatattgtaaccaaggtttcactaccattgtggatgcaatacaattttacaagttacaatgcgtttctatccattttggggtgat |
41715977 |
T |
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| Q |
119 |
cgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggttgatgtaactcgat |
218 |
Q |
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| T |
41715978 |
cgccccaaatggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggttgatccaactcgag |
41716077 |
T |
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| Q |
219 |
ggagaagaacaattggctgtgaccc |
243 |
Q |
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| T |
41716078 |
ggagaagcacaatttgctgtgaccc |
41716102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 41656191 - 41656246
Alignment:
| Q |
129 |
ggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagctt |
184 |
Q |
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| T |
41656191 |
ggcttcacaatttcctcattcttttcatggtacaccctcaccctttcacaaagctt |
41656246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 2440948 - 2440818
Alignment:
| Q |
97 |
tttctatccattttgcagtgatcgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatga |
196 |
Q |
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| T |
2440948 |
tttctatccatttcgcggtgattggcccagatggcttcacaatttcctcattcttttccgggtacaccctcacccattcacaaagcttgttgatcaatga |
2440849 |
T |
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| Q |
197 |
tgcatggttgatgtaactcgatggagaagaa |
227 |
Q |
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| T |
2440848 |
tgcatggctaatgtagctcgttggagaagaa |
2440818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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