View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_low_21 (Length: 242)
Name: NF20257_low_21
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 1509006 - 1509118
Alignment:
| Q |
16 |
aaaggtactgacgtcactaaattttggattttgtggaaaacatgagaagggtggtggttttagttggccaatcacaatcattcgctatgtatttgcgata |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||| || ||||||| || |||||||||||||||||| || |||| ||| || | ||||| |
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| T |
1509006 |
aaagctactgacgtcactaaattttggattttgtgg-aaacattaggagggtggcggctttagttggccaatcacattctttcggtatttagtcacgata |
1509104 |
T |
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| Q |
116 |
gttttattcgctgt |
129 |
Q |
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| T |
1509105 |
gttttattcgctgt |
1509118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 1491125 - 1491239
Alignment:
| Q |
14 |
gcaaaggtactgacgtcactaaattttggattttgtggaaaacatgagaagggtggtggttttagttggccaatcacaatcattcgctatgtatttgcga |
113 |
Q |
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| T |
1491125 |
gcaaagctaccgatgtcactaaattttggattttgtagaaaacataaggagggtggttgtttttgttggccaattaccttc-ttcgctatgtagtcgcga |
1491223 |
T |
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| Q |
114 |
tagttttattcgctgt |
129 |
Q |
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| T |
1491224 |
tagttttattcgctgt |
1491239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 12122836 - 12122890
Alignment:
| Q |
170 |
gtagcagagggaaatgaattgtttttaaactccaagtttcatgagatcttgtcac |
224 |
Q |
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| T |
12122836 |
gtagcagagggaaattaattgtttttaaactccaagtttcatgagatcttgtcac |
12122890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 1513135 - 1513189
Alignment:
| Q |
170 |
gtagcagagggaaatgaattgtttttaaactccaagtttcatgagatcttgtcac |
224 |
Q |
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| T |
1513135 |
gtagcagagggaaactaattgtttttaaattctaagtttcatgagatcttgtcac |
1513189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 19374227 - 19374327
Alignment:
| Q |
24 |
tgacgtcactaaattttggattttgtggaaaacatgagaagggtggtggttttagttggccaatcacaatcattcgctatgtatttgcgatagttttatt |
123 |
Q |
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||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||| | ||||||||| || ||| ||||| |||| || |
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| T |
19374227 |
tgacgtcactaaaatccggattttgtggaaaacatgagga---tggtggttttagttggccaatcaaattcattcgctttgcattcacgataattttctt |
19374323 |
T |
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| Q |
124 |
cgct |
127 |
Q |
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|||| |
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| T |
19374324 |
cgct |
19374327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 5548374 - 5548450
Alignment:
| Q |
29 |
tcactaaattttggattttgtggaaaacatgagaagggtggtggttttagttggccaatcacaatcattcgctatgtatt |
108 |
Q |
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|||||||||| ||||||||||||||||| ||| |||||||||| ||| |||||||||| | ||||||||| |||||| |
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| T |
5548374 |
tcactaaattccggattttgtggaaaacaggag---ggtggtggttatagctggccaatcaaattcattcgctttgtatt |
5548450 |
T |
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