View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20257_low_23 (Length: 238)

Name: NF20257_low_23
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20257_low_23
NF20257_low_23
[»] chr4 (8 HSPs)
chr4 (114-223)||(26085294-26085403)
chr4 (131-183)||(26048361-26048413)
chr4 (131-183)||(26053542-26053594)
chr4 (131-183)||(26098702-26098754)
chr4 (1-43)||(26085181-26085223)
chr4 (1-43)||(26097462-26097504)
chr4 (4-43)||(26036829-26036868)
chr4 (1-43)||(26065477-26065519)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 26085294 - 26085403
Alignment:
Q  114 atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaagttagagaacttcaatgatgaaaatgaaac 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26085294 atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattactaattgaagttagagaacttcaatgatgaaaatgaaac 26085393  T
Q  214 ctgggtcttg 223  Q
    ||||||||||    
T  26085394 ctgggtcttg 26085403  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 26048361 - 26048413
Alignment:
Q  131 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26048361 ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa 26048413  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 26053542 - 26053594
Alignment:
Q  131 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26053542 ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa 26053594  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 26098702 - 26098754
Alignment:
Q  131 ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa 183  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  26098702 ctcacataatattgataatgatgaagaaaggtattataaaattacaagttgaa 26098754  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26085181 - 26085223
Alignment:
Q  1 ttaactctatctgatgattcagattcagctgaattttcctgcc 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26085181 ttaactctatctgatgattcagattcagctgaattttcctgcc 26085223  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26097462 - 26097504
Alignment:
Q  1 ttaactctatctgatgattcagattcagctgaattttcctgcc 43  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  26097462 ttaactctatctgatgattcacattcagctgaattttcctgcc 26097504  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 26036829 - 26036868
Alignment:
Q  4 actctatctgatgattcagattcagctgaattttcctgcc 43  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  26036829 actctatctgatgattcacattcagctgagttttcctgcc 26036868  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26065477 - 26065519
Alignment:
Q  1 ttaactctatctgatgattcagattcagctgaattttcctgcc 43  Q
    |||||| ||||||||||||||||||| |||||| |||||||||    
T  26065477 ttaactttatctgatgattcagattctgctgaactttcctgcc 26065519  T

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