View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_low_25 (Length: 235)
Name: NF20257_low_25
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2180629 - 2180849
Alignment:
| Q |
1 |
caaattctaatggattatgctacaaagaaaagaatatggtgattattatgagtatcttttgcaataagccccaatagttatcatgttcttgaactttggg |
100 |
Q |
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| T |
2180629 |
caaattctaatggattatgctacagagaaaagaatatggtgattattatgagtatcttttgcaataagcctcaatagttatcatgttcttgaactttggg |
2180728 |
T |
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| Q |
101 |
ggtaagctagccttccgcatcgatggtaagaacaattctatgagacaaaaaacannnnnnnnnnnnnnngaaacagtaagtgatcatatgaatatctaaa |
200 |
Q |
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| T |
2180729 |
ggtaagctagccttccgcattgaaggtaagaacaattctatgagacaaaaaacatttttaaaatattttgaaacagtaagtgatcatatgaatatctaaa |
2180828 |
T |
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| Q |
201 |
acatgacaagaattaaaattt |
221 |
Q |
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| T |
2180829 |
acatgacaagaattaaaattt |
2180849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 35668785 - 35668711
Alignment:
| Q |
37 |
tggtgattattatgagtatcttttgcaataagccccaatagttatcatgttcttgaactttgggggtaagctagc |
111 |
Q |
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| T |
35668785 |
tggtgattatgatgagtatcttccgtagcaagccctaatagttaccatgtttttgaacttcgcgggtaagctagc |
35668711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 15182195 - 15182087
Alignment:
| Q |
1 |
caaattctaatggattatgctacaaagaaaagaatatggtgattattatgagtatcttttgcaataagccccaatagttatcatgttcttgaactttggg |
100 |
Q |
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| T |
15182195 |
caaattctcatcggttatgctatacagaaaagag-atggtgattgtgatgaatatattttgtagcaagtcacaatagttatcatgctattgaacttcggg |
15182097 |
T |
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| Q |
101 |
ggtaagctag |
110 |
Q |
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| T |
15182096 |
ggtaagctag |
15182087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 15788655 - 15788700
Alignment:
| Q |
51 |
agtatcttttgcaataagccccaatagttatcatgttcttgaactt |
96 |
Q |
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| T |
15788655 |
agtatcttctgcaacaagcctcaatagttatcgtgttcttgaactt |
15788700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 13209374 - 13209302
Alignment:
| Q |
40 |
tgattattatgagtatcttttgcaataagccccaatagttatcatgttcttgaactttgggggtaagctagcc |
112 |
Q |
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| T |
13209374 |
tgattatgatgagtatcttctccatcaaacctcaatgattatcttgttcttgaactttaggggtaagctagcc |
13209302 |
T |
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