View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20257_low_27 (Length: 227)
Name: NF20257_low_27
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 44062915 - 44062720
Alignment:
| Q |
17 |
aatatcaatccctaatacttatacaactaataaatcccaaaagtactatgatgatcgtccaaaagtgtttttgaaacacattgcttttaacaactaatta |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44062915 |
aatataaatccctaatacttatacaactaataaatcccaaaagtactatgatgatcgtccaaaagtgtttttgaaacacattgcttttaacaactaatta |
44062816 |
T |
|
| Q |
117 |
gttctctatctcacagaaacacgttacgaagtgttcttgaatccatgacagccaggtaacaatgtttgatgtttcctttaatcaaaagtcaaaact |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44062815 |
gttctctatctcacagaaacacgttacgaagtgttcttgaatccatgacagccagataacaatgtttgatgtttcctttaatcaaaagtcaaaact |
44062720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 44076278 - 44076195
Alignment:
| Q |
75 |
ccaaaagtgtttttgaaacacattgcttttaacaactaattagttctctatctcacagaaacacgttacgaagtgttcttgaat |
158 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |||| |||||||||||||| || | ||||||| ||| |||||||||| |||| |
|
|
| T |
44076278 |
ccaaaggtgtttttgaaacacatttcttttgacaattaattagttctctagcttattgaaacacattatgaagtgttctagaat |
44076195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 44081179 - 44081233
Alignment:
| Q |
68 |
tgatcgtccaaaagtgtttttgaaacacattgcttttaacaactaattagttctc |
122 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
44081179 |
tgatcgaccaaatgtgtttttgtaacacatttcttttgacaactaattagttctc |
44081233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 44061167 - 44061118
Alignment:
| Q |
75 |
ccaaaagtgtttttgaaacacattgcttttaacaactaattagttctcta |
124 |
Q |
| |
|
||||| |||||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
44061167 |
ccaaaggtgtttacgaaacacaatgcttttgacaactaattagttctcta |
44061118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 30670421 - 30670367
Alignment:
| Q |
65 |
tgatgatcgtccaaaagtgtttttgaaacacattgcttttaacaactaattagtt |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
30670421 |
tgatgatcgtcctaaagtgtttttgaaacacatttcttttagcaactaattagtt |
30670367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University