View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_low_28 (Length: 226)
Name: NF20257_low_28
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8269949 - 8269731
Alignment:
| Q |
1 |
tctcaatttattgttaattgtttgtcacatttacaaaaagtttcatttttatttatttatagttatcaaatttcaatacaatattaattgttgttttacc |
100 |
Q |
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| T |
8269949 |
tctcaatttattgttaattgtttgtcacatttacaaaaagtttcatttttatttatttatagttatcaaatttcaatgcaatattaattgtcattttacc |
8269850 |
T |
|
| Q |
101 |
aataatattttaaattacttattatagatagagaaatagataaaaatacgattagaaagggttatagnnnnnnngtttgctagttttatcaaaaagaatt |
200 |
Q |
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| T |
8269849 |
aataatattttaaattacttattatagatagagaaatagataaaaatacgattagaaagggttatagaaaaaaa-tttgctagttttataaaaaataata |
8269751 |
T |
|
| Q |
201 |
atatttattgatattcttgg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
8269750 |
atatttattgatattcttgg |
8269731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 10263803 - 10263841
Alignment:
| Q |
66 |
tcaaatttcaatacaatattaattgttgttttaccaata |
104 |
Q |
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|
| T |
10263803 |
tcaaatttcaatgcaatattaaatgttgttttaccaata |
10263841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 3237441 - 3237347
Alignment:
| Q |
51 |
atttatttatagttatcaaatttcaatacaatattaattgttgttttaccaataatattttaaattacttattatagatagagaaatagataaaa |
145 |
Q |
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| T |
3237441 |
atttattcatggtttttaaaattcaatataatattaattattgttttgtcaataatatttttaactatttattctagagagaaagatagataaaa |
3237347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 36750233 - 36750265
Alignment:
| Q |
72 |
ttcaatacaatattaattgttgttttaccaata |
104 |
Q |
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|
| T |
36750233 |
ttcaatacaatattaaatgttgttttaccaata |
36750265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 6737316 - 6737259
Alignment:
| Q |
50 |
tatttatttatagttatcaaatttcaatacaatattaattgttgttttaccaataata |
107 |
Q |
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|
| T |
6737316 |
tatttatttatcattttcaaagttcaatgcaatattaattattgttttatcaataata |
6737259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 16701080 - 16701048
Alignment:
| Q |
72 |
ttcaatacaatattaattgttgttttaccaata |
104 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
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|
| T |
16701080 |
ttcaatacaatattaaatgttgttttaccaata |
16701048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 39663796 - 39663832
Alignment:
| Q |
66 |
tcaaatttcaatacaatattaattgttgttttaccaa |
102 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |
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| T |
39663796 |
tcaaattttaatacaatattaaatgttgttttaccaa |
39663832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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