View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20257_low_4 (Length: 426)
Name: NF20257_low_4
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 45568217 - 45567842
Alignment:
| Q |
16 |
atgaagacagaggattgttagatacccttaatttagttttaatttgttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45568217 |
atgaagacagaggattgttagatacccttaatttagttttaattagttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttc |
45568118 |
T |
|
| Q |
116 |
attatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagnnnnnnnnncct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45568117 |
attatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagtttttttttcct |
45568018 |
T |
|
| Q |
216 |
cgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaaagggtagatgagaatttaaagaatattggtcat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45568017 |
cgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcat---------------------atttaaagaatattggtcat |
45567939 |
T |
|
| Q |
316 |
tacagacactacgtttgaatcctgatgaggacaatatcagaggttctattgcctgtcttagagctagggatgtttcaaggaagaacatagaaaaatt |
412 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45567938 |
tacagacacaacgtttgaatcctgatgaggacaatatcagaggttctattgcctgtcttagagctagggatgtttcaaggaagaacatagaaaaatt |
45567842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 84 - 412
Target Start/End: Original strand, 35817131 - 35817457
Alignment:
| Q |
84 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaat |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
35817131 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggatgatagtgttaatttaatcgatgagaaattatttgaaaagcaaat |
35817230 |
T |
|
| Q |
184 |
ggaccgctgagaagatgcagnnnnnnnnn-cctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaa |
282 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||| |||||| ||||||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
35817231 |
ggaccactgggaagatgcaggtttttttttcctcgtgtcttaaatggtta-ttaacaggtcttaaattgtctcaatggaccagttatctcat--ctgaaa |
35817327 |
T |
|
| Q |
283 |
agggtagatgagaatttaaagaatattggtcattacagacactacgtttgaatcctgatgaggacaatatcagaggttctattgcctgtcttagagctag |
382 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
35817328 |
agggtagatgagaaattatagaatattggtcattatagacactacatttgaatactgacgaggacaatatcagaggttttattgcttgtcttagagctag |
35817427 |
T |
|
| Q |
383 |
ggatgtttcaaggaagaacatagaaaaatt |
412 |
Q |
| |
|
||||||||| |||||||||| |||||||| |
|
|
| T |
35817428 |
ggatgtttcgaggaagaacagggaaaaatt |
35817457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 96 - 412
Target Start/End: Complemental strand, 45093218 - 45092912
Alignment:
| Q |
96 |
gatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgaga |
195 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||| | |||||| ||||||||||||| |||||| ||||| |
|
|
| T |
45093218 |
gatacttgccacaatttttcactatccctatttgagtcttggatgatag-gttaatctaatcattgagaaataatttgaaaagcaactggaccattgaga |
45093120 |
T |
|
| Q |
196 |
agatgcagnnnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttatctcatatctgaaaagggtagatgaga |
295 |
Q |
| |
|
| ||||| |||||||| |||| |||||||||||||||||||||| || || |||| |||||||||| |||||||||||||||| |
|
|
| T |
45093119 |
aaatgca-agtttttttcctcgtgtattaaatggttaattaacaggtcttaaaatg--------gaagagttctctcatatctcaaaagggtagatgaga |
45093029 |
T |
|
| Q |
296 |
atttaaagaatattggtcattacagacactacgtttgaatcctgatgaggacaatatcagaggttctattgcctgtcttagagctagggatgtttcaagg |
395 |
Q |
| |
|
||||||||||| ||| || || ||||||||| |||||||| |||||||||||||| | ||| ||||||||||||||| |||||| | ||||||| ||| |
|
|
| T |
45093028 |
atttaaagaattttgatcgttgtagacactacatttgaatctcgatgaggacaatattaaaggctctattgcctgtcttggagctaagtatgtttcgagg |
45092929 |
T |
|
| Q |
396 |
aagaacatagaaaaatt |
412 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
45092928 |
aagaacagagaaaaatt |
45092912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 35816823 - 35816864
Alignment:
| Q |
23 |
cagaggattgttagatacccttaatttagttttaatttgttt |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35816823 |
cagaggattgttagatacccttaatttagttttaattagttt |
35816864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 45177309 - 45177357
Alignment:
| Q |
16 |
atgaagacagaggattgttagatacccttaatttagttttaatttgttt |
64 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
45177309 |
atgaaggcagaggattgttagatgcccttaatttacttttaattagttt |
45177357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 45093527 - 45093489
Alignment:
| Q |
26 |
aggattgttagatacccttaatttagttttaatttgttt |
64 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
45093527 |
aggattgttagatacccttcatttagttttaattagttt |
45093489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University