View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_low_5 (Length: 416)
Name: NF20257_low_5
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 50228192 - 50227804
Alignment:
| Q |
18 |
atatactctctttgggattcggtcaagtaaattgccgagaaacaaagtggtcttctcaatgtaaccattctcaataagttgataattacattctcataca |
117 |
Q |
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| T |
50228192 |
atatactctctttgggattcggtcaagtaaatcgccgagaaacaaagtggtcttctcaatgtaaccattctcaataagttgataattacattctcataca |
50228093 |
T |
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| Q |
118 |
tggaagaagaggcagtagcagctgtacttgaggnnnnnnnnaaaaattgaggtgtttcagttggtgccaactgcagaaacttattgtttaaccattgaag |
217 |
Q |
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| T |
50228092 |
tggaagaaggggcagtagcagctgtacttgaggttttttttaaaaattgaggtgtttcagttggtgccaactgcagaaacttattgtttaaccatcgaag |
50227993 |
T |
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| Q |
218 |
ctctttgcactggaactggaccaaagaaatctgaggtatctgaattggtttgttctgtgtgtcagaagattattgctgcacagacttcctgatggcgaaa |
317 |
Q |
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| T |
50227992 |
ctctttgcactggaactggaccaaagaaatctgaggtatctgaattggtttgttctgtttgtcagaagattattgctgcacagacttcctgatggcgaaa |
50227893 |
T |
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| Q |
318 |
aaatgggtagaataatgtcttggttgtgtagagacggaacgtttaaagaagctcatgcagtatatgtggcagcaattaattgagaataa |
406 |
Q |
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| T |
50227892 |
aaatgggtagaataatgtcttggttgtgtagagacggaacgtttaaagaagctcatgcagtatatgtggcagcaattaattgagaataa |
50227804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 36829696 - 36829777
Alignment:
| Q |
268 |
tgttctgtgtgtcagaagattattgctgcacaga--cttcctgatggcgaaaaaatgggtagaataatgtcttggttgtgta |
347 |
Q |
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| T |
36829696 |
tgttctgtgtgtcagaagatgattgatgcacagaggattcctgatggtgagaaaattggtagaatgttgtcttggttgtgta |
36829777 |
T |
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