View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20257_low_6 (Length: 408)
Name: NF20257_low_6
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_6 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 182 - 394
Target Start/End: Original strand, 33732341 - 33732565
Alignment:
| Q |
182 |
ctacgatcatagccacccactacggctggtcgtaacaacctcaactttaatggcttgatcaattg-------------acgacggtttggaactaaatgt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
33732341 |
ctacgatcatagccacccactacggctggtcgtaacaacctcaactttaatggcttgatcaattgctttcatcatttgaagacggtttggaactaaatgt |
33732440 |
T |
|
| Q |
269 |
tacaaaatctgaagtcttgttgagttaaaatccacctcttaataattgaaagtggtcttaattaactttggtcatgacttagtcaacaaggcttcacaat |
368 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33732441 |
tacaaaatctgaagtgttgttgagttaaaatccacctct-aataattgaaagtggtcttaattaactttggtcatgacttagtcaacaaggcttcacaat |
33732539 |
T |
|
| Q |
369 |
tttatcacgtatttgcaccattattt |
394 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
33732540 |
tttatcgcgtatttgcaccattattt |
33732565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 33732213 - 33732334
Alignment:
| Q |
10 |
caaaggaaacagacaaagcaaaaacaagaaattttaattaaaataaaaatgcaagtacaagagttctttgatgataagtcaaaccaaaccaagaccaaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33732213 |
caaaggaaacagacaaagcaaaaacaagaaattttaattaaaataaaaatgcaagtacaagagttctttgatgataagtcaaaccaaaccaagaccaaac |
33732312 |
T |
|
| Q |
110 |
ttaagactatcattcatacaat |
131 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
33732313 |
ttgagactatcattcatacaat |
33732334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 121373 - 121476
Alignment:
| Q |
125 |
atacaatgatcattcaagggccaaaataaaaaccacaaaattgaagtcaccaatatgctacgatcatagccacccactacggctggtcgtaacaacctca |
224 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||| |||||||||||| || || ||| | ||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
121373 |
atacagtgatcattgaagtgccaaaataaaaaccaccaaattgaagtcattaaggtgttacagacgtag-cactcactatggctggtcgtaacaacctca |
121471 |
T |
|
| Q |
225 |
acttt |
229 |
Q |
| |
|
||||| |
|
|
| T |
121472 |
acttt |
121476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University