View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_low_7 (Length: 400)
Name: NF20257_low_7
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_low_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 6855914 - 6855532
Alignment:
| Q |
18 |
caagtaagtcttactctcataatttttaatttttaagagaattccttcctattccttcatctcctttaatcccttcatcaattacttccttttgtaagta |
117 |
Q |
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| T |
6855914 |
caagtaagtcttactctcataattttgaatttttaagagaattcctttctattccttcatctcctttaatcccttcatcaattacttccttttgtaagta |
6855815 |
T |
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| Q |
118 |
aggaagctacttagtagaaggaattaaggtgaagttttatctttaatgagtaactgttattggatattgagtagtgttgcaacatgcaaaggaagttttc |
217 |
Q |
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| T |
6855814 |
aggaagctacttagtagaaggaattaaggtgaagttttatctttaatgagtaactgttatcggatattgagtagtgttgcaacatgcaaaggaagttttc |
6855715 |
T |
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| Q |
218 |
tgagttatgttttaagaaactttgtgaattgaactatatacacatagacactgtatctggagttcttgtttgtgattaagtggaaatgccaggcccctat |
317 |
Q |
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| T |
6855714 |
tgagttatgttttaagaaactttgtgaattgaactatatacacatagacactgtatctggagttcttgtttgtgattaagtggaaatgccaggcccctat |
6855615 |
T |
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| Q |
318 |
ggaactagagttgtagagagttatacttacatatttgagatttcgatgatttacaaagttttattactgcaagtggtcttgtg |
400 |
Q |
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| T |
6855614 |
ggaactagaaatgtagagagttatacttacatatttgagatttcgatgatttacaaagttttattactgcaagtggtcttgtg |
6855532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 399
Target Start/End: Original strand, 6820746 - 6820859
Alignment:
| Q |
286 |
tttgtgattaagtggaaatgccaggcccctatggaactagagttgtagagagttatacttacatat-ttgagatttcgatgatttacaaagttttattac |
384 |
Q |
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| T |
6820746 |
tttgtaattgagtggaaatgacaggccc-tatgggactagaaatgtagacagttgtacttacatatgttgagattttaaggctttgcaaggttttatttc |
6820844 |
T |
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| Q |
385 |
tgcaagtggtcttgt |
399 |
Q |
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| T |
6820845 |
tgcaaggggtcttgt |
6820859 |
T |
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