View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20258_high_1 (Length: 570)
Name: NF20258_high_1
Description: NF20258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20258_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 30587580 - 30587525
Alignment:
| Q |
75 |
aaaatgcattaaaaatagtcaggagtgggcctgcaccctattacaaatgagagaat |
130 |
Q |
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| T |
30587580 |
aaaatgcattaaaaatagtcaggagtgggcctgcaccctattacaaatgagagaat |
30587525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 28138229 - 28138284
Alignment:
| Q |
64 |
gataaaggctaa-aaatgcattaaaaatagtcaggagtgggcctgcaccctattaca |
119 |
Q |
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| T |
28138229 |
gataaaggctaagaaatgcattaaaa-tcggcaggagtgggtctgcaccctattaca |
28138284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 8058811 - 8058697
Alignment:
| Q |
185 |
tggcaatccctgtattctactgccacttacttcaaatccctaggtaaaca-aaactagcctagcatatcgctatcaaggaaaggcaaaacaaaaatacgt |
283 |
Q |
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| T |
8058811 |
tggcaatccatgtaaactactgccacatacaacaaatccctagcaaaacagaaactagactagcatatctcaaacaaggaaaggcaaaacaaaataatgt |
8058712 |
T |
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| Q |
284 |
ggatcttctgtactg |
298 |
Q |
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| T |
8058711 |
ggatcttctgaactg |
8058697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 8058928 - 8058867
Alignment:
| Q |
64 |
gataaaggctaaaaatgcattaaaaatagtcaggagtgggcctgcaccctattacaaatgagaga |
128 |
Q |
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| T |
8058928 |
gataaaggctaaaaatgcattaaaaaat---aggagagggcctgcaccctattacatatgagaga |
8058867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 4293088 - 4293023
Alignment:
| Q |
65 |
ataaaggctaaaaa-tgcattaaaaata-gtcaggagtgggcctgcaccctattacaaatgagaga |
128 |
Q |
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| T |
4293088 |
ataaaggctaaaaaatgcattaaaaaaaaggcaggagtgggcctgcaccctattacaaatgagaga |
4293023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 12107033 - 12106935
Alignment:
| Q |
201 |
ctactgccacttacttcaaatccctaggtaaaca-aaactagcctagcatatcgctatcaaggaaaggcaaaacaaaaatacgtggatcttctgtactg |
298 |
Q |
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| T |
12107033 |
ctactgccgcttacaacaaatccctagcaaaacagaaactagcctagcatatcttaaacaaggaaaggcaaaacaaaataatgtggatcttcggtactg |
12106935 |
T |
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