View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20258_low_2 (Length: 337)

Name: NF20258_low_2
Description: NF20258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20258_low_2
NF20258_low_2
[»] chr6 (12 HSPs)
chr6 (1-318)||(17950870-17951196)
chr6 (1-318)||(35174691-35175018)
chr6 (1-318)||(34344780-34345106)
chr6 (78-318)||(4289727-4289977)
chr6 (219-306)||(31210135-31210222)
chr6 (53-174)||(17936044-17936166)
chr6 (2-47)||(9399323-9399368)
chr6 (247-318)||(17936249-17936320)
chr6 (1-47)||(11356399-11356445)
chr6 (1-47)||(32437956-32438002)
chr6 (2-47)||(20524632-20524677)
chr6 (250-318)||(30639922-30639990)
[»] chr4 (30 HSPs)
chr4 (1-318)||(39922462-39922789)
chr4 (1-318)||(39084607-39084934)
chr4 (1-318)||(39190274-39190601)
chr4 (1-318)||(42879593-42879920)
chr4 (1-318)||(43778698-43779023)
chr4 (1-318)||(5485507-5485834)
chr4 (1-318)||(44993117-44993444)
chr4 (1-318)||(32653086-32653413)
chr4 (206-318)||(230757-230868)
chr4 (208-318)||(25994781-25994891)
chr4 (206-318)||(13438162-13438274)
chr4 (45-170)||(4519965-4520089)
chr4 (59-170)||(51041205-51041314)
chr4 (46-154)||(10544498-10544606)
chr4 (53-153)||(28101066-28101165)
chr4 (206-278)||(39294553-39294625)
chr4 (1-47)||(35402542-35402588)
chr4 (64-318)||(44556919-44557183)
chr4 (65-170)||(27626246-27626351)
chr4 (101-173)||(25994660-25994732)
chr4 (86-170)||(35997299-35997383)
chr4 (1-47)||(2692160-2692206)
chr4 (206-318)||(47942414-47942526)
chr4 (247-318)||(10544692-10544763)
chr4 (1-47)||(834034-834080)
chr4 (1-47)||(5438879-5438925)
chr4 (1-47)||(11641293-11641339)
chr4 (272-318)||(13450042-13450088)
chr4 (57-153)||(26397422-26397518)
chr4 (206-318)||(44793245-44793357)
[»] chr2 (29 HSPs)
chr2 (1-318)||(28247630-28247957)
chr2 (1-318)||(11021842-11022169)
chr2 (1-318)||(38149491-38149819)
chr2 (56-183)||(11313276-11313402)
chr2 (219-318)||(363369-363468)
chr2 (228-318)||(7744955-7745045)
chr2 (228-318)||(17948624-17948714)
chr2 (45-170)||(37418263-37418389)
chr2 (45-170)||(35751-35875)
chr2 (95-183)||(10715561-10715648)
chr2 (5-52)||(10715869-10715916)
chr2 (64-170)||(42002990-42003096)
chr2 (87-167)||(40150746-40150826)
chr2 (1-47)||(2768137-2768183)
chr2 (1-47)||(17697430-17697476)
chr2 (206-318)||(10715419-10715530)
chr2 (206-314)||(37418436-37418544)
chr2 (271-318)||(11313144-11313191)
chr2 (66-161)||(27950405-27950500)
chr2 (1-44)||(39663942-39663985)
chr2 (45-83)||(10715647-10715685)
chr2 (1-47)||(24206405-24206451)
chr2 (5-47)||(34401057-34401099)
chr2 (1-47)||(42518302-42518348)
chr2 (88-170)||(42880350-42880432)
chr2 (5-47)||(44708696-44708738)
chr2 (206-318)||(15373555-15373668)
chr2 (262-318)||(2359411-2359467)
chr2 (206-314)||(42880478-42880586)
[»] chr8 (41 HSPs)
chr8 (1-318)||(40019465-40019792)
chr8 (1-318)||(28432528-28432854)
chr8 (206-318)||(11031715-11031827)
chr8 (206-318)||(10269207-10269319)
chr8 (206-318)||(25356642-25356754)
chr8 (45-318)||(33369071-33369356)
chr8 (45-318)||(9876059-9876341)
chr8 (206-318)||(9186303-9186415)
chr8 (59-167)||(461648-461756)
chr8 (61-169)||(25371636-25371744)
chr8 (64-170)||(1321829-1321935)
chr8 (59-170)||(33159126-33159236)
chr8 (45-170)||(33748805-33748929)
chr8 (254-318)||(25705592-25705656)
chr8 (228-315)||(10268113-10268200)
chr8 (59-145)||(37525332-37525418)
chr8 (53-170)||(38881869-38881989)
chr8 (206-310)||(12515395-12515498)
chr8 (206-314)||(42895086-42895194)
chr8 (265-318)||(25370819-25370872)
chr8 (258-318)||(10770657-10770717)
chr8 (206-318)||(15684065-15684177)
chr8 (250-318)||(25402522-25402590)
chr8 (250-318)||(25707031-25707099)
chr8 (206-318)||(33158968-33159080)
chr8 (206-318)||(38881711-38881823)
chr8 (219-318)||(11719767-11719866)
chr8 (219-318)||(24527205-24527304)
chr8 (231-318)||(44620368-44620455)
chr8 (1-47)||(9672175-9672221)
chr8 (250-316)||(25373352-25373418)
chr8 (1-47)||(41041459-41041505)
chr8 (92-170)||(42895241-42895319)
chr8 (206-318)||(461488-461600)
chr8 (206-318)||(1321982-1322094)
chr8 (206-318)||(32823939-32824051)
chr8 (135-183)||(44620263-44620311)
chr8 (45-144)||(11719942-11720041)
chr8 (1-47)||(29238398-29238444)
chr8 (221-318)||(37525170-37525267)
chr8 (206-318)||(31823143-31823255)
[»] chr1 (24 HSPs)
chr1 (1-318)||(5784322-5784649)
chr1 (1-318)||(11152854-11153180)
chr1 (45-182)||(42558403-42558540)
chr1 (206-318)||(25172702-25172814)
chr1 (45-170)||(46637235-46637359)
chr1 (64-170)||(42135761-42135867)
chr1 (228-318)||(51123235-51123325)
chr1 (45-170)||(18183075-18183199)
chr1 (45-170)||(31803196-31803320)
chr1 (64-170)||(44158807-44158913)
chr1 (207-318)||(6576774-6576885)
chr1 (64-170)||(33679708-33679814)
chr1 (64-170)||(35478554-35478660)
chr1 (64-170)||(45379553-45379658)
chr1 (1-47)||(50554977-50555023)
chr1 (208-317)||(33679571-33679680)
chr1 (206-318)||(44158961-44159073)
chr1 (1-44)||(15105650-15105693)
chr1 (206-288)||(18180818-18180900)
chr1 (1-47)||(26224419-26224465)
chr1 (1-47)||(27088490-27088536)
chr1 (1-47)||(33600018-33600064)
chr1 (1-47)||(42558720-42558766)
chr1 (206-318)||(45379395-45379507)
[»] chr7 (41 HSPs)
chr7 (1-318)||(45464638-45464966)
chr7 (12-318)||(4321392-4321706)
chr7 (1-318)||(48302461-48302788)
chr7 (1-182)||(30109048-30109229)
chr7 (45-318)||(34692250-34692537)
chr7 (228-318)||(30108874-30108964)
chr7 (220-318)||(11685346-11685444)
chr7 (45-170)||(38614333-38614457)
chr7 (206-318)||(34784328-34784440)
chr7 (45-318)||(2168349-2168633)
chr7 (45-170)||(46995131-46995255)
chr7 (265-318)||(19712015-19712068)
chr7 (206-318)||(40785216-40785328)
chr7 (64-318)||(3690461-3690725)
chr7 (45-183)||(11684063-11684201)
chr7 (70-161)||(40361292-40361383)
chr7 (64-170)||(36756398-36756504)
chr7 (64-170)||(36762195-36762301)
chr7 (206-318)||(36766075-36766187)
chr7 (249-316)||(7403500-7403567)
chr7 (1-47)||(34692023-34692069)
chr7 (1-47)||(47385081-47385127)
chr7 (101-173)||(48705396-48705466)
chr7 (206-318)||(36756551-36756663)
chr7 (206-318)||(36762348-36762460)
chr7 (206-318)||(46811016-46811128)
chr7 (1-47)||(24227295-24227341)
chr7 (5-47)||(34775836-34775878)
chr7 (1-47)||(46438383-46438429)
chr7 (45-170)||(23954800-23954924)
chr7 (230-318)||(1547363-1547450)
chr7 (1-44)||(22155104-22155147)
chr7 (1-44)||(22211019-22211062)
chr7 (64-166)||(47340438-47340540)
chr7 (1-47)||(77261-77307)
chr7 (59-145)||(40785079-40785165)
chr7 (1-47)||(45360540-45360586)
chr7 (64-182)||(46811160-46811277)
chr7 (1-47)||(48851345-48851391)
chr7 (206-318)||(8421727-8421839)
chr7 (206-318)||(35342737-35342849)
[»] chr5 (28 HSPs)
chr5 (1-318)||(42619598-42619919)
chr5 (206-318)||(1344479-1344591)
chr5 (45-170)||(40330010-40330135)
chr5 (47-170)||(38177102-38177225)
chr5 (47-170)||(38204326-38204449)
chr5 (45-170)||(35291514-35291638)
chr5 (45-170)||(43317198-43317323)
chr5 (45-170)||(32836346-32836470)
chr5 (220-318)||(24497759-24497857)
chr5 (45-170)||(18727033-18727158)
chr5 (45-170)||(32089417-32089545)
chr5 (206-318)||(1343501-1343613)
chr5 (45-183)||(18341599-18341737)
chr5 (67-170)||(35400226-35400329)
chr5 (206-318)||(40330182-40330294)
chr5 (247-318)||(6116608-6116679)
chr5 (1-47)||(28821598-28821644)
chr5 (206-314)||(32836192-32836300)
chr5 (1-44)||(2180975-2181018)
chr5 (1-44)||(18624192-18624235)
chr5 (45-144)||(27076963-27077062)
chr5 (1-47)||(17575140-17575186)
chr5 (1-47)||(17577171-17577217)
chr5 (1-47)||(21842205-21842251)
chr5 (1-47)||(34328127-34328173)
chr5 (206-288)||(35291387-35291469)
chr5 (1-47)||(42472357-42472403)
chr5 (206-318)||(18726874-18726986)
[»] chr3 (36 HSPs)
chr3 (38-318)||(41945593-41945881)
chr3 (1-175)||(37886237-37886411)
chr3 (206-318)||(37865693-37865805)
chr3 (45-318)||(26448058-26448338)
chr3 (45-318)||(1847160-1847443)
chr3 (206-318)||(40963055-40963167)
chr3 (45-170)||(33112309-33112435)
chr3 (219-318)||(30501410-30501509)
chr3 (44-170)||(2975894-2976019)
chr3 (48-170)||(48634872-48634994)
chr3 (45-170)||(45897508-45897634)
chr3 (45-170)||(23775149-23775274)
chr3 (222-318)||(49494800-49494896)
chr3 (53-318)||(32842740-32843015)
chr3 (56-153)||(35862027-35862124)
chr3 (206-286)||(2975802-2975882)
chr3 (1-47)||(2378213-2378259)
chr3 (68-170)||(31885987-31886088)
chr3 (206-318)||(31885829-31885941)
chr3 (64-318)||(33851293-33851555)
chr3 (1-47)||(21349918-21349964)
chr3 (60-170)||(24382183-24382293)
chr3 (1-47)||(27897989-27898035)
chr3 (228-318)||(33051146-33051236)
chr3 (64-318)||(45255794-45256058)
chr3 (206-314)||(10380605-10380713)
chr3 (46-145)||(13466609-13466708)
chr3 (45-144)||(24846049-24846148)
chr3 (1-47)||(13466409-13466455)
chr3 (1-47)||(35904623-35904669)
chr3 (1-47)||(44275092-44275138)
chr3 (1-47)||(46198943-46198989)
chr3 (129-170)||(10380517-10380558)
chr3 (136-173)||(30501564-30501601)
chr3 (2-47)||(53188574-53188619)
chr3 (206-314)||(48635040-48635148)
[»] scaffold0006 (2 HSPs)
scaffold0006 (228-318)||(37977-38067)
scaffold0006 (137-183)||(37877-37923)
[»] scaffold0345 (1 HSPs)
scaffold0345 (1-47)||(760-806)
[»] scaffold0070 (1 HSPs)
scaffold0070 (250-318)||(57690-57758)
[»] scaffold0920 (1 HSPs)
scaffold0920 (1-40)||(1401-1440)
[»] scaffold1041 (1 HSPs)
scaffold1041 (265-318)||(2636-2689)
[»] scaffold0004 (1 HSPs)
scaffold0004 (6-47)||(107461-107502)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 17951196 - 17950870
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17951196 attgtttttaaagtaacctagttcttcagcttcatcaacccgcacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 17951097  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaat---------tttggttttcaga 191  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  17951096 actttgatagctctttttgcccaaatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 17950997  T
Q  192 ttcaattnnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattaca 291  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17950996 ttcaattaaaaaaattagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattaca 17950897  T
Q  292 cattgtaaaattagggttccaatttta 318  Q
    |||||||||||||||||||||||||||    
T  17950896 cattgtaaaattagggttccaatttta 17950870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 35175018 - 35174691
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||    
T  35175018 attgttttcaaagtaacctagttcttcagcttcatcaacccgcacaacattcaggcactctcatatcaccattaaacatggaggatgaagatgaagcttg 35174919  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaat---------tttggttttcaga 191  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  35174918 actttgatagctctttttgcccatatgatcacctcccattattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 35174819  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35174818 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 35174719  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  35174718 acattgtaaaattagggttccaatttta 35174691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 34344780 - 34345106
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  34344780 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagttgaagcttg 34344879  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||| |||||         ||||||||||||| |    
T  34344880 actttgatagctctttttgcccatatgaccacc-ccaatcattttagattcaatttcaacacttttgcttaaatgaattttgcagattttggttttcata 34344978  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    | |||||        |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34344979 tccaattaaaaaaaattagggtttgcaatttttttattcggggaagaacgtgacccttaattattggaagaaaatttgaagattttggagtgtagattac 34345078  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    |||||||||| |||||||||||||||||    
T  34345079 acattgtaaagttagggttccaatttta 34345106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 78 - 318
Target Start/End: Complemental strand, 4289977 - 4289727
Alignment:
Q  78 atggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaa 177  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  4289977 atggaggataaagatgaagcttgactttgatagctctttttgcccatatgaccacc-cccatcattttaaattcaatttcaacagttttgcttgaatgaa 4289879  T
Q  178 ttttg---------gttttcagattcaattnnnnnnnt--tagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatt 266  Q
    |||||         ||||||||||||||||          ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4289878 ttttgcagattttggttttcagattcaattaaaaaaaaaatagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatt 4289779  T
Q  267 tggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  4289778 tggagattttggagtatagattacacattgtaaaattaggattccaatttta 4289727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 306
Target Start/End: Original strand, 31210135 - 31210222
Alignment:
Q  219 ttttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagg 306  Q
    |||||||| ||||||||||| || |||  |||||||||||  | | ||| ||||||||||||||||||||||| ||||||||||||||    
T  31210135 ttttttgaattggggaagaaagttaccactaattattggataatatttttgagattttggagtgtagattacagattgtaaaattagg 31210222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 17936044 - 17936166
Alignment:
Q  53 aagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttt-tgcccatatgaccacctcccatcattttagattc 151  Q
    ||||| ||| |||||||||||||||||  |   ||||||||||||| |||||||| | || |||| |||||||| | ||||| ||||||||||  |||||    
T  17936044 aagcattctgacatcaccattaaacataaattttgaagatgaagctcgactttgagaactgttttttgcccatacgtccaccacccatcatttcggattc 17936143  T
Q  152 aatttcaacagttttgcttgaat 174  Q
    ||| | |||| ||||||||||||    
T  17936144 aatctgaacaattttgcttgaat 17936166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 9399323 - 9399368
Alignment:
Q  2 ttgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  9399323 ttgtttttaaaataacctagttcttcagcttcatcaacccacacaa 9399368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 17936249 - 17936320
Alignment:
Q  247 ttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||| ||||||||| |||||  |||||||| ||||||||| | |||| |||||||||||| ||||||||    
T  17936249 ttaattaatggaagaaattttgggaattttggattgtagattagagattgaaaaattagggtttcaatttta 17936320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11356399 - 11356445
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||    
T  11356399 attgtttttaaaataacctagttcttcagcttcatcaactcacacaa 11356445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32438002 - 32437956
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  32438002 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 32437956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 20524632 - 20524677
Alignment:
Q  2 ttgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    ||||||||||| || | | |||||||||||||||||||||||||||    
T  20524632 ttgtttttaaaatagcatagttcttcagcttcatcaacccacacaa 20524677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 30639990 - 30639922
Alignment:
Q  250 attattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||||| |||| || || |||||| ||||||||||| || |||||  ||||| |||||||||||||    
T  30639990 attattggaggaaatttaggtgattttagagtgtagattgcagattgtgtaattatggttccaatttta 30639922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 39922462 - 39922789
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39922462 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 39922561  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  39922562 actttgatagctccttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 39922661  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39922662 ttcaattaaaaaaaattagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 39922761  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  39922762 acattgtaaaattagggttccaatttta 39922789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 39084607 - 39084934
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39084607 attgtttttaaagtaacctagttcttcagtttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 39084706  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  39084707 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 39084806  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39084807 ttcaattaaaaaaaattagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 39084906  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||| ||||||||||||    
T  39084907 acattgtaaaattagagttccaatttta 39084934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 39190274 - 39190601
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39190274 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 39190373  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||||||    
T  39190374 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaatagttttgcttgaatgaattttgcagattttggttttcaga 39190473  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39190474 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 39190573  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  39190574 acattgtaaaattagggttccaatttta 39190601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 42879920 - 42879593
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  42879920 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaatcactctcacatcaccattaaacatggaggatgaagatgaagcttg 42879821  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaat---------tttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  42879820 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 42879721  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42879720 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 42879621  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  42879620 acattgtaaaattagggttccaatttta 42879593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 43779023 - 43778698
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43779023 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 43778924  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaat---------tttggttttcaga 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  43778923 actttgatagctccttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 43778824  T
Q  192 ttcaattnnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattaca 291  Q
    |||||||       |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43778823 ttcaattaaaaaaattagggtttgcaattttttga-ttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattaca 43778725  T
Q  292 cattgtaaaattagggttccaatttta 318  Q
    |||||||||||||||||||||||||||    
T  43778724 cattgtaaaattagggttccaatttta 43778698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5485507 - 5485834
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5485507 attgtttttaaagtaacctagttcatcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagacgaagcttg 5485606  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||         |||||||||||||||    
T  5485607 actttgatagctctttttgcccatatgaccgcctcccatcattttagattcaatttcaacatttttgcttgaatgaattttgcagattttggttttcaga 5485706  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5485707 ttcaattaaaaaaaattagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 5485806  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    |||| |||||||||||||||||||||||    
T  5485807 acatggtaaaattagggttccaatttta 5485834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 44993444 - 44993117
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  44993444 attgtttttaaagtaacctaattcttcagcttcatcaacccacataacattcaagcactttcacatcaccattaaacatggaggatgaagatgaaacttg 44993345  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaat---------tttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  44993344 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 44993245  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44993244 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttgaagattttggagtgtagattac 44993145  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    |||||||||||||||| |||||||||||    
T  44993144 acattgtaaaattaggattccaatttta 44993117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 32653086 - 32653413
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||    
T  32653086 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcgagcactctcacatcaccattaaacatgaaggatgaagatgaagcttg 32653185  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||         ||||||||||||| |    
T  32653186 actttgatagctctttttgcccatatgaccacc-cccttcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcata 32653284  T
Q  192 ttcaatt--nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagatta 289  Q
    |||||||         |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32653285 ttcaattaaaaaaaaattagggtttgtaattttttgatttggggaagaacatgacccttaattattggaagaaaatttggagattttggagtgtagatta 32653384  T
Q  290 cacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||||| ||| ||||||||    
T  32653385 cacattgtaaaattagagtttcaatttta 32653413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 230868 - 230757
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| |||||||||| || || |||||||| |||  |||||||||||||||| ||||| || |||||||||||||||||| |||||||||||||    
T  230868 ttagggtttgaaattttttgaattagg-aagaacgttaccactaattattggaagaaattttggggactttggagtgtagattacagattgtaaaattag 230770  T
Q  306 ggttccaatttta 318  Q
    | | |||||||||    
T  230769 gatgccaatttta 230757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 25994781 - 25994891
Alignment:
Q  208 agggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattaggg 307  Q
    |||||||| | |||||||| ||| ||||||| || |||  |||||||||||||||| ||||  ||||||||||||||||||||| |||||||| |||| |    
T  25994781 agggtttggagttttttgaattgaggaagaatgttaccactaattattggaagaaattttgaggattttggagtgtagattacagattgtaaatttagag 25994880  T
Q  308 ttccaatttta 318  Q
    |||||||||||    
T  25994881 ttccaatttta 25994891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 13438274 - 13438162
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| ||||||||||| || |||  |||||||||||||||| |||||  ||||||||||||| |||| | |||||||||||||    
T  13438274 ttagggtttgaagttttttgaattggggaagaaagttaccactaattattggaagaaattttgggaattttggagtgtacattaaagattgtaaaattag 13438175  T
Q  306 ggttccaatttta 318  Q
    |||| | ||||||    
T  13438174 ggtttctatttta 13438162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 4519965 - 4520089
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||| | ||||||||||||||| |||||  ||||||||||||| |||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  4519965 caacattcaagcactttgacatcaccattaaacttggagcttgaagatgaagctcgactttcataactgttttttcccatatttccacc-cccatcattt 4520063  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     | ||||| |||||| ||||||||||    
T  4520064 catattcattttcaatagttttgctt 4520089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 51041314 - 51041205
Alignment:
Q  59 tctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttca 158  Q
    ||||||||||||||||||| |||||  |||||||||| || |||||| ||| || ||||| |||||||  ||||  |||||||||| | |||||||||||    
T  51041314 tctcacatcaccattaaacttggagcttgaagatgaaactcgactttcataactgttttttcccatattcccac--cccatcatttcatattcaatttca 51041217  T
Q  159 acagttttgctt 170  Q
    | ||||||||||    
T  51041216 atagttttgctt 51041205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 10544498 - 10544606
Alignment:
Q  46 aacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcatttt 145  Q
    |||||| || || ||| ||||||||||||||||| |||  ||||||||||| | |||||||| | || |||||||||||| | ||||| ||||||||||     
T  10544498 aacattcaaacattctgacatcaccattaaacatagagcttgaagatgaagttcgactttgagaactgtttttgcccatacgcccaccacccatcatttc 10544597  T
Q  146 agattcaat 154  Q
    | |||||||    
T  10544598 atattcaat 10544606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 28101165 - 28101066
Alignment:
Q  53 aagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattca 152  Q
    |||||| ||||||||||||||| |||| |||  ||||||||||| | | |||||||| || |||||||| ||||| ||||| |||||||||| |||||||    
T  28101165 aagcaccctcacatcaccattatacatagagcttgaagatgaagatcgtctttgataactatttttgcctatatg-ccaccacccatcatttcagattca 28101067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 39294553 - 39294625
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttgg 278  Q
    |||||||||| | |||||||| |||||||||||||| |||  |||||||||||||||| ||||| ||||||||    
T  39294553 ttagggtttgaagttttttgaattggggaagaacgttaccactaattattggaagaaattttggggattttgg 39294625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35402588 - 35402542
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||    
T  35402588 attgtttttaaaataacctagttcttcagcttcatcaacccacacaa 35402542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 318
Target Start/End: Complemental strand, 44557183 - 44556919
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| |||||   |||||||||||| |||||| ||| |  ||||| |||||||  ||||| | ||||||||| ||||  ||||||| |||    
T  44557183 catcaccattaaacttggagctagaagatgaagctcgactttcataacagttttttcccatattcccacccctcatcattttggattttatttcaatagt 44557084  T
Q  164 tttgcttgaa-------tga--attttggttttcagattcaattnnnnnnn-ttagggtttgtaattttttgatttggggaagaacgtgacccttaatta 253  Q
    ||||||| ||       |||  ||||||||||| |||||||||         |||||||||| | |||||||| ||||||||||||  ||||  | ||||    
T  44557083 tttgcttcaagaatttttgaggattttggttttaagattcaatacgaaaaaattagggtttgaagttttttgaattggggaagaactggaccacttatta 44556984  T
Q  254 ttggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||| |||| || || |||||| ||||||||||| || |||||  ||||||  |||||||||||    
T  44556983 ttggaggaaatttaggtgattttagagtgtagattgcagattgtgtaattagaattccaatttta 44556919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 27626246 - 27626351
Alignment:
Q  65 atcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagtt 164  Q
    ||||||||||||| |||||  ||||||||||||| |||||| ||| |  |||||  ||||||  ||||| ||||||||||| ||||  ||||||| ||||    
T  27626246 atcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttgccatattcccaccccccatcattttggattttatttcaatagtt 27626345  T
Q  165 ttgctt 170  Q
    ||||||    
T  27626346 ttgctt 27626351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 25994660 - 25994732
Alignment:
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaa 173  Q
    ||||| ||| ||||||||||||||||| |||   ||||||||||| | |||||||| ||||||||||||||||    
T  25994660 actttcataactctttttgcccatatgtccaatccccatcattttggcttcaatttgaacagttttgcttgaa 25994732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 35997299 - 35997383
Alignment:
Q  86 tgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgctt 170  Q
    ||||||||||||| ||||||  || |  ||||| |||||||  ||||| |||||||||| |||||||||||||| ||||||||||    
T  35997299 tgaagatgaagctcgactttcttaacagttttttcccatattcccaccccccatcatttcagattcaatttcaatagttttgctt 35997383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2692206 - 2692160
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||||    
T  2692206 attgtttttaaaataacctagttcttcagcttcatcaacccagacaa 2692160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 47942414 - 47942526
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | |||||||| ||||||||||||  ||||  | ||||||||| |||| || || ||| || || ||||||||| | |||||  ||||||    
T  47942414 ttagggttttaagttttttgaattggggaagaactggaccacttattattggaggaaatttaggtgatattagaatgtagattatagattgtgtaattag 47942513  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  47942514 ggttccaatttta 47942526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 10544692 - 10544763
Alignment:
Q  247 ttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||| ||||||||| ||||| ||||||||| ||||||  |   |||| |||||||||||||||||||||    
T  10544692 ttaattaatggaagaaattttggggattttggactgtagacgagggattgaaaaattagggttccaatttta 10544763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 834080 - 834034
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  834080 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 834034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5438879 - 5438925
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  5438879 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 5438925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11641293 - 11641339
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| ||| |||||||||||||||||| ||||    
T  11641293 attgtttttaaaataacctagttattcagcttcatcaacccagacaa 11641339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 13450042 - 13450088
Alignment:
Q  272 attttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||||||||| |||| | ||||||||||||||||| ||||||||    
T  13450042 attttggagtgtacattaaagattgtaaaattagggtttcaatttta 13450088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 26397422 - 26397518
Alignment:
Q  57 actctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaa 153  Q
    |||||| |||||||||||||||| |||  ||| ||||||    |||||||||| || ||||||| ||||||   ||| |||||||||| ||||||||    
T  26397422 actctcgcatcaccattaaacatagagcttgaggatgaataccgactttgataactatttttgctcatatgcttaccacccatcatttcagattcaa 26397518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 44793357 - 44793245
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | |||||||| ||||||||||||  ||||  | ||||||||| |||| ||  | ||| || || ||||||||| | |||||  ||||||    
T  44793357 ttagggttttaagttttttgaattggggaagaactggaccacttattattggaggaaatttatgtgatattagaatgtagattatagattgtgtaattag 44793258  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  44793257 ggttccaatttta 44793245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 28247630 - 28247957
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28247630 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 28247729  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  28247730 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 28247829  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28247830 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 28247929  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  28247930 acattgtaaaattagggttccaatttta 28247957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 11022169 - 11021842
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11022169 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 11022070  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaat---------tttggttttcaga 191  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||         |||| ||||||||    
T  11022069 actttgatagctctttttgtccatatgaccacccctcatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttgattttcaga 11021970  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11021969 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 11021870  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  11021869 acattgtaaaattagggttccaatttta 11021842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 38149491 - 38149819
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38149491 attgtttttaaagtaacctagttcttcaacttcatcaacccacacaacatttaagcattctcacatcaccattaaacatggaggatgaagatgaagcttg 38149590  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  38149591 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 38149690  T
Q  192 ttcaatt--nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagatta 289  Q
    |||||||         | ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38149691 ttcaattaaaaaaaaatcaggatttgcaattttttgatttggggaataacgtgacccttaattattggaagaaaatttggagattttagagtgtagatta 38149790  T
Q  290 cacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||||||||||||||||||    
T  38149791 cacattgtaaaattagggttccaatttta 38149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 11313402 - 11313276
Alignment:
Q  56 cactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatt 155  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||||||||  ||||||||||||||||| ||||| ||||||| |||  ||||||||    
T  11313402 cactctcacatcaccattaaacatggagcttgaagataaagcttgactttgatgactctttttgcccatatgcccacc-cccatcagtttctattcaatt 11313304  T
Q  156 tcaacagttttgcttgaatgaattttgg 183  Q
    | ||||||||||||||||  ||||||||    
T  11313303 tgaacagttttgcttgaagaaattttgg 11313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 363369 - 363468
Alignment:
Q  219 ttttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||| |||| ||||||||| |||  |||||||||||||||| ||||  ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  363369 ttttttgaattggagaagaacgttaccactaattattggaagaaattttgaggattttggagtgtagattacatattgtaaaattagggttccaatttta 363468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 7744955 - 7745045
Alignment:
Q  228 ttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||| |||  |||||||||||||||  |||||  |||||||||||| ||||| | ||||||||||||||||| ||||||||    
T  7744955 ttggggaagaacgttaccactaattattggaagaatttttgggaattttggagtgtggattaaagattgtaaaattagggtttcaatttta 7745045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 17948624 - 17948714
Alignment:
Q  228 ttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||| |||   ||||||||||||||  |||||  |||||||||||| ||||| | ||||||||||||||||| ||||||||    
T  17948624 ttggggaagaacgttaccaccaattattggaagaatttttgggaattttggagtgtggattaaagattgtaaaattagggtttcaatttta 17948714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 37418263 - 37418389
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgc-ccatatgaccacctcccatcatt 143  Q
    ||||||| ||||||||||||| ||||||||||| || ||   ||||||||| || |||||| ||| || |||||   ||||||  ||||| |||||||||    
T  37418263 caacattcaagcactctcacaacaccattaaacttgaagctcgaagatgaaactcgactttcataactgttttttttccatattcccaccccccatcatt 37418362  T
Q  144 ttagattcaatttcaacagttttgctt 170  Q
    | |||||||||||||| ||||||||||    
T  37418363 tcagattcaatttcaatagttttgctt 37418389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 35875 - 35751
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||| ||||||||||| |||||  |||||||||| ||| ||||| ||| | | ||||  ||||||  ||||  | ||||||||    
T  35875 caacattcaagcactctcacaacaccattaaacttggagcttgaagatgaaacttaactttcataac-cgttttttccatattcccactccacatcattt 35777  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||||||||||||| ||||||||||    
T  35776 cagattcaatttcaatagttttgctt 35751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 10715648 - 10715561
Alignment:
Q  95 agcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgg 183  Q
    ||||||||||||||| ||||||||| ||||||| ||||| | ||||||||   ||||||||| ||||||||||||||||  ||||||||    
T  10715648 agcttgactttgataactctttttgtccatatgcccacc-cgcatcatttcgaattcaatttgaacagttttgcttgaagaaattttgg 10715561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 10715916 - 10715869
Alignment:
Q  5 tttttaaagtaaccttgttcttcagcttcatcaacccacacaacattt 52  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  10715916 tttttaaagtaacctagttcttcagcttcatcaacccacacaaaattt 10715869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 42002990 - 42003096
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| |||||  ||||||||||||| |||||| ||| |  ||||| |||||||  ||||| || ||||||| |||||  ||||||| |||    
T  42002990 catcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttcccatattcccaccccctatcatttcagattttatttcaatagt 42003089  T
Q  164 tttgctt 170  Q
    |||||||    
T  42003090 tttgctt 42003096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 40150826 - 40150746
Alignment:
Q  87 gaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttg 167  Q
    ||||||||| ||||||||||| |  | |||||||||||| | ||||| |||||||||||||||||||| | |||| |||||    
T  40150826 gaagatgaaacttgactttgagaattgtttttgcccatacggccaccacccatcattttagattcaatctgaacaattttg 40150746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2768137 - 2768183
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || ||| |||||||||||||||||||||||||||    
T  2768137 attgtttttaaaatagcctagttcttcagcttcatcaacccacacaa 2768183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17697430 - 17697476
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||    
T  17697430 attgtttttaaaataacctagttcttcagcttcatcaacctacacaa 17697476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 10715530 - 10715419
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| ||||| || ||||| ||   ||||||| ||||| || |||||  |||||  || |||||||| | |||||||||||||    
T  10715530 ttagggtttgaagttttttgaattggg-aacaacgttactgctaattatcggaaggaattttgggaattttttagggtagattaaagattgtaaaattag 10715432  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  10715431 ggttccaatttta 10715419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 37418436 - 37418544
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| |||| |||||||  |||| || || |||||| || | ||||| |||||| ||||||| ||| || |||||  ||||||    
T  37418436 ttagggtttgaagttttttgaattggcgaagaactggaccatttataattggaggatattttggtgattttagagtgtaaattgcagattgtgtaattag 37418535  T
Q  306 ggttccaat 314  Q
    |||||||||    
T  37418536 ggttccaat 37418544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 11313191 - 11313144
Alignment:
Q  271 gattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||| |||| | |||||||||||||||||| |||||||    
T  11313191 gattttggagtgtacattaaagattgtaaaattagggttctaatttta 11313144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 27950405 - 27950500
Alignment:
Q  66 tcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaaca 161  Q
    |||| ||||| |||||||  ||||||||||||| |||||||| || | ||||    |||| ||||||| ||||||||||| |||||||||| ||||    
T  27950405 tcacaattaagcatggagcttgaagatgaagctcgactttgagagttgttttaagtcatacgaccaccacccatcattttggattcaatttgaaca 27950500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39663985 - 39663942
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccaca 44  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||    
T  39663985 attgttttcaaaataacctagttcttcagcttcatcaacccaca 39663942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 10715685 - 10715647
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggag 83  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  10715685 caacattcaagcactctcacagcaccattaaacatggag 10715647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24206451 - 24206405
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  24206451 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 24206405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 34401099 - 34401057
Alignment:
Q  5 tttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||| || ||| |||||||||||||||||||||||||||    
T  34401099 tttttaaaatagcctagttcttcagcttcatcaacccacacaa 34401057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42518348 - 42518302
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || ||| |||||| ||||||||||||||||||||    
T  42518348 attgtttttaaaatagcctagttctttagcttcatcaacccacacaa 42518302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 42880350 - 42880432
Alignment:
Q  88 aagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgctt 170  Q
    ||||||||||| |||||| ||| || ||||| |||||||  ||| | ||||| ||||  ||||||||||||| ||||||||||    
T  42880350 aagatgaagctcgactttcataactgttttttcccatattcccaacccccatgatttctgattcaatttcaatagttttgctt 42880432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 44708738 - 44708696
Alignment:
Q  5 tttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||| ||||||  ||||||||||||||||||||||||||    
T  44708738 tttttaaaataacctaattcttcagcttcatcaacccacacaa 44708696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 15373555 - 15373668
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtg-acccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaatta 304  Q
    |||||||||  | |||||||| |||||||||||| || |||  | ||||||||| |||| || || ||| || || ||||||||| | |||||  |||||    
T  15373555 ttagggttttaagttttttgaattggggaagaacttggaccacttattattggaggaaatttaggtgatattagaatgtagattatagattgtgtaatta 15373654  T
Q  305 gggttccaatttta 318  Q
    ||||||||||||||    
T  15373655 gggttccaatttta 15373668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 2359467 - 2359411
Alignment:
Q  262 aaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||| | ||||||||| | ||||| ||| ||||||||||||||||| ||||||||    
T  2359467 aaattttgggattttggactctagatgacaaattgtaaaattagggtttcaatttta 2359411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 42880478 - 42880586
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||| | ||||||||||||  |||| || || |||||| || | ||||| |||||| ||||||| ||| || |||||  ||||||    
T  42880478 ttagggtttgaagttttttaaattggggaagaactggaccatttataattggaggatattttggtgattttagagtgtaaattgcagattgtgtaattag 42880577  T
Q  306 ggttccaat 314  Q
    |||| ||||    
T  42880578 ggtttcaat 42880586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 40019792 - 40019465
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40019792 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 40019693  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaat---------tttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  40019692 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 40019593  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40019592 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggggtgtagattac 40019493  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  40019492 acattgtaaaattagggttccaatttta 40019465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 28432854 - 28432528
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28432854 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaaacttg 28432755  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||         |||||||||||||||    
T  28432754 actttggtagctctttttgcccatatgaccacc-cccatcattttagattcaatttcaacagatttgcttgaatgaattttgtagattttggttttcaga 28432656  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||         || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28432655 ttcaattaaaaaaaaatacggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 28432556  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  28432555 acattgtaaaattagggttccaatttta 28432528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 11031827 - 11031715
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| || ||||||||||| |||  |||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||    
T  11031827 ttagggtttgaagttttttgaattagggaagaacgttaccactaattattggaagaaattttggggattttggagtgtagattatagattgtaaaattag 11031728  T
Q  306 ggttccaatttta 318  Q
    | |||||||||||    
T  11031727 gcttccaatttta 11031715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 10269207 - 10269319
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||| ||||| | |||||||| |||||||||||||| |||  |||||||||||||||| ||||| |||||||| |||||||||  | |||||||||||||    
T  10269207 ttagcgtttgaagttttttgaattggggaagaacgttaccactaattattggaagaaattttggggattttggtgtgtagattgtagattgtaaaattag 10269306  T
Q  306 ggttccaatttta 318  Q
    | |||||||||||    
T  10269307 gcttccaatttta 10269319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 25356754 - 25356642
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| |||||||||||||| |||  | |||||||||||||| ||||| ||||||||||||||||||||| || ||| ||||||    
T  25356754 ttagggtttgaagttttttgaattggggaagaacgttaccacttattattggaagaaattttggtgattttggagtgtagattacatatagtataattag 25356655  T
Q  306 ggttccaatttta 318  Q
     |||||| |||||    
T  25356654 agttccagtttta 25356642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 318
Target Start/End: Complemental strand, 33369356 - 33369071
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| |||| |||||||||||||||||||  |||||  ||||||| |||||  ||||| ||| |  ||||| | |||||  |||| |||||||||||    
T  33369356 caacattcaagcgctctcacatcaccattaaatttggagcttgaagataaagctcaactttcataaccgttttttctcatattcccacgtcccatcattt 33369257  T
Q  145 tagattcaatttcaacagttttgcttgaat---------gaattttggttttcagattcaattnnnnnnn---ttagggtttgtaattttttgatttggg 232  Q
     |||||||||||||| |||||||||| ||          ||||||||| |||||||||||||           || ||||||| | |||||||| |||||    
T  33369256 cagattcaatttcaatagttttgcttcaagaagttttgggaattttggctttcagattcaataagaaaaaaaattcgggtttgaagttttttgaattggg 33369157  T
Q  233 gaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||  ||||  | |||||||||||||  ||||| |||||||||||||||||| || ||| |  |||||||||||||||||||    
T  33369156 gaagaactggaccacttattattggaagaagttttggtgattttggagtgtagattgcagattatgtaattagggttccaatttta 33369071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 318
Target Start/End: Original strand, 9876059 - 9876341
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||| |||||||  |||||||||| |||||  |||||||||||||||||||| ||| |  ||||| |||||||  ||||| ||||||||||    
T  9876059 caacattcaagcattctcacaataccattaaacttggagcctgaagatgaagcttgactttcataacagttttttcccatattcccacc-cccatcattt 9876157  T
Q  145 tagattcaatttcaacagttttgcttgaa-------tga--attttggttttcagattcaattnnnnnnn-ttagggtttgtaattttttgatttgggga 234  Q
     |||||||||||||| |||||||||| ||       |||  ||||||| ||||||||||| |         |||||||||| | |||||||| ||||||     
T  9876158 cagattcaatttcaatagttttgcttcaaaaaattttgaggattttggctttcagattcactacgaaaaaattagggtttgaagttttttgaattggggc 9876257  T
Q  235 agaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||  ||||  | ||||||||| |||| ||| | |||| | ||||||||||| || |||||| |||||||||| ||||||||    
T  9876258 agaactggaccacttattattggaggaaatttttgtgattatagagtgtagattgcagattgtataattagggtttcaatttta 9876341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 9186303 - 9186415
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | |||||||| ||||| |||||||| | |  |||||||||||||||| ||  | ||||||||||||||||||||| |||||||||||||    
T  9186303 ttagggtttaaagttttttgaattgggtaagaacgttatcactaattattggaagaaatttatgggattttggagtgtagattacagattgtaaaattag 9186402  T
Q  306 ggttccaatttta 318  Q
    |||| ||||||||    
T  9186403 ggtttcaatttta 9186415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 461756 - 461648
Alignment:
Q  59 tctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttca 158  Q
    ||||||||||||||||||| |||||  ||||||||||||| |||||| ||| || ||| | |||||||  ||||  |||||||||| |||||||||||||    
T  461756 tctcacatcaccattaaacttggagcttgaagatgaagctcgactttcataactgtttcttcccatattcccacaccccatcatttcagattcaatttca 461657  T
Q  159 acagttttg 167  Q
    | |||||||    
T  461656 atagttttg 461648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 25371636 - 25371744
Alignment:
Q  61 tcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaac 160  Q
    ||||||||||||||||| |||||  ||||||||||||| ||| || ||| || ||||| |||||||| ||||| | ||||||||  |||||||||||||     
T  25371636 tcacatcaccattaaacttggagcttgaagatgaagctcgacattcataactgttttttcccatatgcccacccctcatcatttcggattcaatttcaat 25371735  T
Q  161 agttttgct 169  Q
    |||||||||    
T  25371736 agttttgct 25371744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 1321829 - 1321935
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| |||||  ||||||||||||| |||||| ||| |  ||||| |||||||  ||||| ||| |||||| |||||||||||||| |||    
T  1321829 catcaccattaaacttggagcttgaagatgaagctcgactttcataacaattttttcccatattcccaccccccttcatttcagattcaatttcaatagt 1321928  T
Q  164 tttgctt 170  Q
    |||||||    
T  1321929 tttgctt 1321935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 33159236 - 33159126
Alignment:
Q  59 tctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagct-ctttttgcccatatgaccacctcccatcattttagattcaatttc 157  Q
    ||||||||||||||||||| |||||  ||||||||||||| |||||| ||| || ||||||  ||||||  ||||| || ||||||| ||||||||||||    
T  33159236 tctcacatcaccattaaacttggagtttgaagatgaagctcgactttcataactgcttttt--ccatattcccaccccctatcatttcagattcaatttc 33159139  T
Q  158 aacagttttgctt 170  Q
    || ||||||||||    
T  33159138 aatagttttgctt 33159126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 33748929 - 33748805
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||| ||| ||||||| |||||  |||||||||| ||||||||| ||| | | ||||  ||||||  ||||| | ||||||||    
T  33748929 caacattcaagcactctcacaacactattaaacttggagcttgaagatgaaacttgactttcataac-cgttttttccatattcccaccccacatcattt 33748831  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||||||||||||| ||||||||||    
T  33748830 cagattcaatttcaatagttttgctt 33748805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 25705656 - 25705592
Alignment:
Q  254 ttggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||| ||||| ||||||||||||||||||||| || ||| |||||||||||||||||||    
T  25705656 ttggaagaaattttggtgattttggagtgtagattacatatagtataattagggttccaatttta 25705592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 315
Target Start/End: Complemental strand, 10268200 - 10268113
Alignment:
Q  228 ttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatt 315  Q
    ||||||||||| || ||   |||||||||||||||| || || ||||||||||||||||||| | |||| ||||||||||||||||||    
T  10268200 ttggggaagaatgttactactaattattggaagaaatttgggggattttggagtgtagattatagattgaaaaattagggttccaatt 10268113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 37525418 - 37525332
Alignment:
Q  59 tctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcatttt 145  Q
    ||||||||||||||||||| |||||  ||||||||||||| |||||| ||| || ||||| |||||||  ||||| |||||||||||    
T  37525418 tctcacatcaccattaaacttggagcttgaagatgaagctcgactttcataactgttttttcccatattcccaccccccatcatttt 37525332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 38881989 - 38881869
Alignment:
Q  53 aagcactctca--catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctccc-atcattttagat 149  Q
    |||||||||||  ||||||| |||||| |||||  ||||||||||||| |||||| |||  | ||||| |||||||   |||||||| ||||||| ||||    
T  38881989 aagcactctcatacatcaccgttaaacttggagcttgaagatgaagctcgactttcataattgttttttcccatattctcacctccccatcatttcagat 38881890  T
Q  150 tcaatttcaacagttttgctt 170  Q
    |||||||||| ||||||||||    
T  38881889 tcaatttcaatagttttgctt 38881869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 12515498 - 12515395
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| | |||||||||||| | |  ||||||  |||||||| ||||| ||||||||||||||||||| | ||||||||||||     
T  12515498 ttagggtttgaagttttttgaatcggggaagaacgttatcgctaattag-ggaagaaattttggggattttggagtgtagattaaagattgtaaaattac 12515400  T
Q  306 ggttc 310  Q
    |||||    
T  12515399 ggttc 12515395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 42895194 - 42895086
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| ||||||||||||  |||| || || ||||||||| | ||||| |||||| ||||||| ||| || |||||  ||||||    
T  42895194 ttagggtttgaagttttttgaattggggaagaactggaccatttataattggaagatattttggtgattttagagtgtaaattgcagattgtgtaattag 42895095  T
Q  306 ggttccaat 314  Q
    |||||||||    
T  42895094 ggttccaat 42895086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 25370872 - 25370819
Alignment:
Q  265 tttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||| ||||||||||||||||||||| || ||| |||||||||||||||||||    
T  25370872 tttggtgattttggagtgtagattacatatagtataattagggttccaatttta 25370819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 10770717 - 10770657
Alignment:
Q  258 aagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||| ||||| ||||||||||||  ||||||| ||||||||||||||| ||||||||||    
T  10770717 aagaaattttggggattttggagtgcggattacagattgtaaaattagggctccaatttta 10770657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 15684177 - 15684065
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    ||||| |||| ||||||| || ||||||||||||||   | | ||||| ||||||||| ||| |  |||||| | | ||||||||| ||||||||||| |    
T  15684177 ttaggttttgaaatttttagaattggggaagaacgttgtcatcaattaatggaagaaatttttggaattttgaactctagattacagattgtaaaattgg 15684078  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  15684077 ggttccaatttta 15684065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 25402522 - 25402590
Alignment:
Q  250 attattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||| |||||  |||||||||||||||||||| || ||| ||| |||||| ||||||||    
T  25402522 attattggaagaaattttggttattttggagtgtagattacagatagtacaatcagggtttcaatttta 25402590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 25707031 - 25707099
Alignment:
Q  250 attattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||| |||||  |||||||||||||||||||| || ||| ||| |||||| ||||||||    
T  25707031 attattggaagaaattttggttattttggagtgtagattacagatagtacaatcagggtttcaatttta 25707099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 33159080 - 33158968
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| |  ||||||| ||||||||||||   |||  | |||| |||| |||| ||||| |||||||||||||||||| || |||||  ||||||    
T  33159080 ttagggtttgaagatttttgaattggggaagaaccgaaccacttattactggaggaaattttggtgattttggagtgtagattgcagattgtgtaattag 33158981  T
Q  306 ggttccaatttta 318  Q
    |||| ||||||||    
T  33158980 ggttacaatttta 33158968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 38881823 - 38881711
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | |||||||| ||||||||||||  ||||  | |||||||||||||| || || | |||||||||||| ||| || |||||  |||||     
T  38881823 ttagggtttcaagttttttgaattggggaagaactggaccacttattattggaagaaatttgggtggttttggagtgtacattgcatattgtgtaattaa 38881724  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  38881723 ggttccaatttta 38881711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 11719866 - 11719767
Alignment:
Q  219 ttttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||| ||||||||||||||   | | ||||| ||||||||| ||||| ||||||||| | ||| | | | ||||||||||| ||||||||||||||    
T  11719866 ttttttgaattggggaagaacgttgtcatcaattaatggaagaaattttggggattttggactctaggtgataaattgtaaaattggggttccaatttta 11719767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 24527304 - 24527205
Alignment:
Q  219 ttttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||| ||||||||||||  ||||  | ||||||||| |||| || || |||||| || |||||||| || |||||  |||||||||||||||||||    
T  24527304 ttttttgaattggggaagaactggaccacttattattggaggaaatttaggtgattttagaatgtagattgcagattgtgtaattagggttccaatttta 24527205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 44620368 - 44620455
Alignment:
Q  231 gggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||||| | |||  |||||||||||||||  ||||   |||||||||||| ||||| | ||||||||||||||||| ||||||||    
T  44620368 gggaagaacattaccactaattattggaagaatttttgtgaattttggagtgtggattaaagattgtaaaattagggtttcaatttta 44620455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9672221 - 9672175
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||| | |||||||||||||||||||||||||||    
T  9672221 attgtttttaaaataacttagttcttcagcttcatcaacccacacaa 9672175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 25373352 - 25373418
Alignment:
Q  250 attattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaattt 316  Q
    |||||||||||||| |||||  |||||||||||||||||||| || | | ||| |||||||||||||    
T  25373352 attattggaagaaattttggttattttggagtgtagattacatatagcacaatcagggttccaattt 25373418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41041505 - 41041459
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||| | |||||||||||||||||||||||||||    
T  41041505 attgtttttaaaataacatagttcttcagcttcatcaacccacacaa 41041459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 42895319 - 42895241
Alignment:
Q  92 tgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgctt 170  Q
    ||||||| |||||| ||  || ||||| |||||||  ||||| |||||||||| |||||||||||||| ||||||||||    
T  42895319 tgaagctcgactttcatgactgttttttcccatattcccaccccccatcatttcagattcaatttcaatagttttgctt 42895241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 461600 - 461488
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| |  ||||||| ||||||||||||  ||||  | ||||  ||| |||| ||||| ||||||||||||||||||  | |||||  ||||||    
T  461600 ttagggtttgaagatttttgaattggggaagaactggaccacttattacaggaggaaattttggtgattttggagtgtagattggagattgtgtaattag 461501  T
Q  306 ggttccaatttta 318  Q
    |||| ||||||||    
T  461500 ggttacaatttta 461488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 1321982 - 1322094
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | |||||||| ||||||||||||   |||  | ||||||||| |||| || || |||||| || |||||||| || |||||  ||||||    
T  1321982 ttagggtttcaagttttttgaattggggaagaactgaaccacttattattggaggaaatttaggtgattttagaatgtagattgcagattgtgtaattag 1322081  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  1322082 ggttccaatttta 1322094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 32823939 - 32824051
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| |||||||| |||   |||  | ||||||||| |||| || || ||||||  |||||||||| || |||||  ||||||    
T  32823939 ttagggtttgaagttttttgaattggggaaaaactgaaccacttattattggaggaaatttaggcgattttatagtgtagattgcagattgtgtaattag 32824038  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  32824039 ggttccaatttta 32824051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 44620263 - 44620311
Alignment:
Q  135 cccatcattttagattcaatttcaacagttttgcttgaatgaattttgg 183  Q
    |||||||||| |||||||||| ||||||||||| ||||| |||||||||    
T  44620263 cccatcatttcagattcaattacaacagttttgtttgaaggaattttgg 44620311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 11720041 - 11719942
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||| ||||||||||||||||||| ||| |||  |||||||||||   |||| | ||||||  |||| |||||| | ||||| ||||||||||    
T  11720041 caacattcaagtactctcacatcaccattaagcatagagcttgaagatgaagacagactattatagctgattttacccatacgcccaccacccatcattt 11719942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29238398 - 29238444
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  29238398 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 29238444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 37525267 - 37525170
Alignment:
Q  221 ttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||| ||||||||||||   |||  | |||| |||| |||| ||||| ||||||||||||||||||  | |||||  |||||||||| ||||||||    
T  37525267 ttttgaattggggaagaactgaaccacttattagtggaggaaattttggtgattttggagtgtagattgaagattgtgcaattagggttacaatttta 37525170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 31823143 - 31823255
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| |||||| |||||   |||  |||||||| || |||| |||   |||| | ||||||||||| || |||||  ||||||    
T  31823143 ttagggtttgaagttttttgaattggggcagaactgaaccactaattatttgaggaaattttcatgattatagagtgtagattgcagattgtgtaattag 31823242  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  31823243 ggttccaatttta 31823255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5784322 - 5784649
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5784322 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 5784421  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcaga 191  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||    
T  5784422 actttgatagctctttttgtccatatgaccacccctcatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttgattttcaga 5784521  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5784522 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 5784621  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  5784622 acattgtaaaattagggttccaatttta 5784649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 11153180 - 11152854
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||    
T  11153180 attgtttttaaagtaacctagttcttcaacttcatcaacccacacaacactcaagcattctcacatcaccattaaacatggaggatgaagatgaagtttg 11153081  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttg---------gttttcaga 191  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  11153080 actttgatagctctttttgcccatatgaccacc-cccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttagttttcaga 11152982  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  11152981 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacatgacccttaattattggaagaaaatttggagattttggagtgtagattaa 11152882  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  11152881 acattgtaaaattagggttccaatttta 11152854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 45 - 182
Target Start/End: Complemental strand, 42558540 - 42558403
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||  | ||||||| ||  ||||||||||| | ||||| ||||||||||    
T  42558540 caacattcaagcactctcacatcaccattaaacatggagcttgaagatgaagctcaaatttgataactgattttgcccatacgcccaccacccatcattt 42558441  T
Q  145 tagattcaatttcaacagttttgcttgaatgaattttg 182  Q
     ||||||||| | |||| || ||||||||  |||||||    
T  42558440 cagattcaatctgaacaattatgcttgaagaaattttg 42558403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 25172702 - 25172814
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||| | |||||||||||||| |||  |||||||||||||||| |||||||||||||||| ||| |||| | |||||||||||||    
T  25172702 ttagggtttgaatttttttaaattggggaagaacgttaccactaattattggaagaaattttggagattttggagcgtacattaaagattgtaaaattag 25172801  T
Q  306 ggttccaatttta 318  Q
    ||||| |||||||    
T  25172802 ggttctaatttta 25172814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 46637359 - 46637235
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||| ||||||||||| |||||  |||||||||||||||||||| ||| | | ||||  ||||||  ||||| | ||||||||    
T  46637359 caacattcaagcactctcacaacaccattaaacttggagcttgaagatgaagcttgactttcataac-cgttttttccatattcccaccccacatcattt 46637261  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
    ||||||||||||||| ||||||||||    
T  46637260 tagattcaatttcaatagttttgctt 46637235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 42135761 - 42135867
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| |||||  ||||||||||||| |||||| ||| |  ||||| |||||||  ||||| ||| |||||| |||||||||||||| |||    
T  42135761 catcaccattaaacttggagcttgaagatgaagctcgactttcataacaattttttcccatattcccaccccccttcatttcagattcaatttcaatagt 42135860  T
Q  164 tttgctt 170  Q
    |||||||    
T  42135861 tttgctt 42135867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 51123235 - 51123325
Alignment:
Q  228 ttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||| |||  |||||||||||||||  |||||  |||||||||||| |||||   ||||||||||||||||||||||||||    
T  51123235 ttggggaagaacgttacctctaattattggaagaatttttgggaattttggagtgtggattaatgattgtaaaattagggttccaatttta 51123325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 18183199 - 18183075
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||  ||||||||||||||||||| |||||  |||||||||| || |||||| ||| || ||||| ||||| |  ||||| ||||||||||    
T  18183199 caacattcaagctttctcacatcaccattaaacttggagcttgaagatgaaactcgactttcataactgttttttcccatgttcccacc-cccatcattt 18183101  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||| ||||||||| ||||||||||    
T  18183100 cagatccaatttcaatagttttgctt 18183075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 31803196 - 31803320
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||| ||| ||||||| |||||  |||||||||| ||||||||| ||| | | ||||  ||||||  ||||| | ||||||||    
T  31803196 caacattcaagcactctcacaacactattaaacttggagcttgaagatgaaacttgactttcataac-cgttttttccatattcccaccccacatcattt 31803294  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||||||||||||| ||||||||||    
T  31803295 cagattcaatttcaatagttttgctt 31803320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 44158807 - 44158913
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| || ||  ||||||||||||| |||||| ||| || ||||| ||||||   ||||| ||| |||||| |||||||||||||| |||    
T  44158807 catcaccattaaacttgaagcttgaagatgaagctcgactttcataactattttttcccataatcccaccccccttcatttcagattcaatttcaatagt 44158906  T
Q  164 tttgctt 170  Q
    |||||||    
T  44158907 tttgctt 44158913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 318
Target Start/End: Original strand, 6576774 - 6576885
Alignment:
Q  207 tagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagg 306  Q
    ||||||||| | |||||||| ||||| || |||  ||||  | ||||||||| |||| || || |||||| ||||||||||| || |||||  |||||||    
T  6576774 tagggtttgaagttttttgaattgggaaaaaactggaccacttattattggaggaaatttaggtgattttagagtgtagattgcagattgtttaattagg 6576873  T
Q  307 gttccaatttta 318  Q
    ||||||||||||    
T  6576874 gttccaatttta 6576885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 33679814 - 33679708
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| |||||  ||||||||||||| |||||| ||| |  ||||| || ||||  ||||| ||||||||||  ||||  ||||||| |||    
T  33679814 catcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttcctatattcccaccccccatcatttcggattttatttcaatagt 33679715  T
Q  164 tttgctt 170  Q
    |||||||    
T  33679714 tttgctt 33679708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 35478660 - 35478554
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| || ||  | ||||||||||| |||||| ||| |  ||||| |||||||  ||||| ||||||||||| ||||  ||||||| |||    
T  35478660 catcaccattaaacttgaagcttcaagatgaagctcgactttcataacaattttttcccatattcccaccccccatcattttggattttatttcaatagt 35478561  T
Q  164 tttgctt 170  Q
    |||||||    
T  35478560 tttgctt 35478554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 45379658 - 45379553
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    ||||||| |||||| |||||  | ||||||||||| |||||| ||| |  ||||| |||||||  ||||| ||| |||||| |||||||||||||| |||    
T  45379658 catcaccgttaaacttggagcttaaagatgaagctcgactttcataacaattttttcccatattcccacc-cccttcatttcagattcaatttcaatagt 45379560  T
Q  164 tttgctt 170  Q
    |||||||    
T  45379559 tttgctt 45379553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 50555023 - 50554977
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||||    
T  50555023 attgtttttaaaataacctagttcttcagtttcatcaacccacacaa 50554977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 317
Target Start/End: Complemental strand, 33679680 - 33679571
Alignment:
Q  208 agggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattaggg 307  Q
    |||||||| | |||||||| ||||||||||||  |||   | ||||||||| |||| || || |||||| ||||||| ||| || |||||  ||||||||    
T  33679680 agggtttgaagttttttgaattggggaagaactggactagttattattggaggaaatttaggtgattttagagtgtatattgcagattgtgtaattaggg 33679581  T
Q  308 ttccaatttt 317  Q
    ||||||||||    
T  33679580 ttccaatttt 33679571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 44158961 - 44159073
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | |||||||| |||||||||||| |||||  | ||||||||| |||| || || |||||| || |||||||| || |||||  ||| ||    
T  44158961 ttagggtttcaagttttttgaattggggaagaacttgaccacttattattggaggaaatttaggtgattttagaatgtagattgcagattgtgtaatcag 44159060  T
Q  306 ggttccaatttta 318  Q
    |||| ||||||||    
T  44159061 ggtttcaatttta 44159073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15105650 - 15105693
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccaca 44  Q
    |||||||||||| ||||||  |||||||||||||||||||||||    
T  15105650 attgtttttaaaataacctaattcttcagcttcatcaacccaca 15105693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 18180900 - 18180818
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagatt 288  Q
    |||||||||| | |||||||| |||||||||||   ||||  | |||| |||| |||| ||||| ||||||||||||||||||    
T  18180900 ttagggtttgaagttttttgaattggggaagaatcggaccacttattactggaggaaattttggtgattttggagtgtagatt 18180818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26224465 - 26224419
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  26224465 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 26224419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27088490 - 27088536
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  27088490 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 27088536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33600064 - 33600018
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || ||| ||||||||| |||||||||||||||||    
T  33600064 attgtttttaaaatagcctagttcttcagattcatcaacccacacaa 33600018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42558766 - 42558720
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    ||||||||||||||| | | |||||||||||||||||||||| ||||    
T  42558766 attgtttttaaagtatcatagttcttcagcttcatcaacccagacaa 42558720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 45379507 - 45379395
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | |||| ||| ||||||||||||  ||||  | ||||||||| |||| || || |||||| || |||||||| || |||||  ||||||    
T  45379507 ttagggtttcaagttttctgaattggggaagaactagaccacttattattggaggaaatttaggtgattttagaatgtagattgcaaattgtgtaattag 45379408  T
Q  306 ggttccaatttta 318  Q
    ||||| |||||||    
T  45379407 ggttctaatttta 45379395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 45464638 - 45464966
Alignment:
Q  1 attgtttttaaa-gtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagctt 99  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45464638 attgtttttaaaagtaacctagttcttcagtttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagctt 45464737  T
Q  100 gactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcag 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         ||||||||||||||    
T  45464738 gactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagtattgcttgaatgaattttgcagattttggttttcag 45464837  T
Q  191 attcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagatta 289  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45464838 attcaattaaaaaaaattagggtttgtaattttttgatttggggaagaacgtgacccttaattattgaaagaaaatttggagattttggagtgtagatta 45464937  T
Q  290 cacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||||| ||||||||||||    
T  45464938 cacattgtaaaattagagttccaatttta 45464966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 4321706 - 4321392
Alignment:
Q  12 agtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagc 111  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4321706 agtaacctagttcttcggcttcatcaacccacacaacattcaagcactctcacatcaacattaaacatggaggatgaagatgaagcttgactttgatagc 4321607  T
Q  112 tctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatga---------attttggttttcagattcaattnnnn 202  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||         ||||||||||||||||||||||        
T  4321606 tctttttgcccatatgaccacc-cccatcattttagattcaatttcaatagttttgcttgaatgaattttgcagattttggttttcagattcaattaaaa 4321508  T
Q  203 nnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaat 302  Q
       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4321507 aaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaattttgagattttggagtgtagattacacattgtaaaat 4321408  T
Q  303 tagggttccaatttta 318  Q
    ||||||||||||||||    
T  4321407 tagggttccaatttta 4321392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 48302788 - 48302461
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  48302788 attgtttttaaagtaacctagttcttcagctttatcaacccacacaacattcaagcactctcacatcaccattaaacatggaagatgaagatgaaacttg 48302689  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaat---------tttggttttcaga 191  Q
    ||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||         ||||||||||| |    
T  48302688 actttgatagctctttttgcccatatgaccacccccaatcatttttgtttcaatttcaacagttttgcttgaatgaattttgaagattttggttttcata 48302589  T
Q  192 ttcaatt-nnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||    
T  48302588 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgactcttaattattggaagcaaatttggagattttggagtgtagaatac 48302489  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||| ||| ||||||||    
T  48302488 acattgtaaaattagagtttcaatttta 48302461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 30109229 - 30109048
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30109229 attgtttttaaagtaacctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 30109130  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttg 182  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30109129 actttgatagttctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttg 30109048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 45 - 318
Target Start/End: Original strand, 34692250 - 34692537
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  34692250 caacattcaagcattctcacatcactattaaacatgtaggatgaagatgaagcttgactttgatagctctttttgcccatatgactacc-cccatcattt 34692348  T
Q  145 tagattcaatttcaacagttttgcttgaatga---------attttggttttcagattcaat-----tnnnnnnnttag-ggtttgtaattttttgattt 229  Q
    ||||||||||||||| ||||||||||||||||         |||||||||||||||||||||             |||| |||||| |||||||||||||    
T  34692349 tagattcaatttcaatagttttgcttgaatgaattttgcagattttggttttcagattcaataaaaaaaaaaaaattagtggtttggaattttttgattt 34692448  T
Q  230 ggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34692449 ggggaagaacgtgaccactaattattggaagaaaatttggagattttggagtgtagattaaacattgtaaaattagggttccaatttta 34692537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 30108964 - 30108874
Alignment:
Q  228 ttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30108964 ttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 30108874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 11685346 - 11685444
Alignment:
Q  220 tttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||| |||| ||||||||| |||  ||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11685346 tttttgaattggtgaagaacgttacctctaattattgaaagaaattttggagattttggagtgtagattacagattgtaaaattagggttccaatttta 11685444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 38614333 - 38614457
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    |||||||||||||||||||||||||||||| || |||||  ||||||||||||| |||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  38614333 caacatttaagcactctcacatcaccattagacttggagcttgaagatgaagctcgactttcataactgttttttcccatattcccacc-cccatcattt 38614431  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||||||||||||| ||||||||||    
T  38614432 cagattcaatttcaatagttttgctt 38614457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 34784440 - 34784328
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| |||||||||||||| |||  |||||||||  | ||| ||||||||||||||||||||||||| | |||||||||||||    
T  34784440 ttagggtttggagttttttgaattggggaagaacgttaccactaattattgacataaattttggagattttggagtgtagattaaagattgtaaaattag 34784341  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  34784340 ggttccaatttta 34784328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 45 - 318
Target Start/End: Original strand, 2168349 - 2168633
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagc--tctttttgcccatatgaccacctcccatcat 142  Q
    |||||||| |||||||| ||||||||||||||| |||||  ||||||| ||||| |||||| ||| |  | ||||| |||||||  ||||| ||||||||    
T  2168349 caacatttgagcactctgacatcaccattaaacttggagcttgaagataaagctcgactttcataactattttttttcccatattcccacc-cccatcat 2168447  T
Q  143 tttagattcaatttcaacagttttgcttgaa-------tga--attttggttttcagattcaat-tnnnnnnnttagggtttgtaattttttgatttggg 232  Q
    ||||||||||||||||| |||||||||| ||       |||  ||||||| |||||||||||||         |||||||||| | |||||||| ||||     
T  2168448 tttagattcaatttcaatagttttgcttcaagaaattttgaggattttggctttcagattcaatacgaaaaaattagggtttgaagttttttgaattgga 2168547  T
Q  233 gaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||  |||   | ||||||||| |||| ||||| |||||| ||||||||||| || |||||  |||||||||| ||||||||    
T  2168548 gaagaactggactacttattattggaggaaattttggtgattttagagtgtagattgcagattgtgtaattagggttacaatttta 2168633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 46995255 - 46995131
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||| ||||||||||| |||||  |||||||||||||||||||| ||| | | || |  ||||||  ||||| | ||||||||    
T  46995255 caacattcaagcactctcacaacaccattaaacttggagcttgaagatgaagcttgactttcataac-cgttatttccatattcccaccccacatcattt 46995157  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||||||||||||| ||||||||||    
T  46995156 cagattcaatttcaatagttttgctt 46995131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 19712015 - 19712068
Alignment:
Q  265 tttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  19712015 tttggaaattttggagtgtagattacagattgtaaaattagggttccaatttta 19712068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 40785216 - 40785328
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| |  ||||||| ||||||||||||  ||||  | |||| |||| |||| ||||| |||||||||||||||||| || |||||| ||||||    
T  40785216 ttagggtttgaagatttttgaattggggaagaactggaccacttattagtggaggaaattttggtgattttggagtgtagattgcagattgtacaattag 40785315  T
Q  306 ggttccaatttta 318  Q
    |||| ||||||||    
T  40785316 ggttacaatttta 40785328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 318
Target Start/End: Complemental strand, 3690725 - 3690461
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||| ||||| |||||  |||||||||||||||||||| ||| |  ||||| |||||||  ||||| |   |||||| |||||||||||||| |||    
T  3690725 catcaccactaaacttggagcttgaagatgaagcttgactttcataacaattttttcccatattcccaccccatttcatttcagattcaatttcaatagt 3690626  T
Q  164 tttgcttgaa---------tgaattttggttttcagattcaat-tnnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaatta 253  Q
    ||||||| ||         || ||||||| |||||||||||||         |||||||||  | |||||||| ||||||||||||  ||||  | ||||    
T  3690625 tttgcttcaagaaattttgtggattttggctttcagattcaatacgaaaaaattagggtttcaagttttttgaattggggaagaactggaccacttatta 3690526  T
Q  254 ttggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||| |||| || || |||||| || |||||||| || |||||  |||||||||||||||||||    
T  3690525 ttggaggaaatttaggtgattttagaatgtagattgcaaattgtgtaattagggttccaatttta 3690461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 11684063 - 11684201
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagct-ctttttgcccatatgaccacctcccatcatt 143  Q
    ||||||| ||| |||||||||||||||||||||||||||  | ||||||||||| |||||| |||  | |||||||||| ||  |||||| | |||||||    
T  11684063 caacattcaagtactctcacatcaccattaaacatggagcttaaagatgaagctcgactttcataattgctttttgccctta-caccacccctcatcatt 11684161  T
Q  144 ttagattcaatttcaacagttttgcttgaatgaattttgg 183  Q
    |  ||||||| || |||| |||||||||||  ||||||||    
T  11684162 tcggattcaaattgaacaattttgcttgaagaaattttgg 11684201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 40361292 - 40361383
Alignment:
Q  70 cattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaaca 161  Q
    ||||||||||| ||  ||||||||||||| || ||||| |||| |||||  ||||||||||||| |||||||||| ||||||||||| ||||    
T  40361292 cattaaacatgaagcttgaagatgaagctcgagtttgagagctattttttgccatatgaccaccacccatcatttcagattcaatttgaaca 40361383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 36756398 - 36756504
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| |||||  ||||||||||||| |||||| ||| |  ||||| |||||||  ||||| ||||||||||| ||||  ||||||| |||    
T  36756398 catcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttcccatattcccaccccccatcattttggattttatttcaatagt 36756497  T
Q  164 tttgctt 170  Q
    |||||||    
T  36756498 tttgctt 36756504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 36762195 - 36762301
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| |||||  ||||||||||||| |||||| ||| |  ||||| |||||||  ||||| ||||||||||| ||||  ||||||| |||    
T  36762195 catcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttcccatattcccaccccccatcattttggattttatttcaatagt 36762294  T
Q  164 tttgctt 170  Q
    |||||||    
T  36762295 tttgctt 36762301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 36766075 - 36766187
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| ||||||||||||   |||  | ||||||||| |||| || || |||||| ||||||||||| || |||||| ||||||    
T  36766075 ttagggtttgaagttttttgaattggggaagaactaaaccacttattattggaggaaatttaggtgattttagagtgtagattgcagattgtataattag 36766174  T
Q  306 ggttccaatttta 318  Q
    |||| ||||||||    
T  36766175 ggtttcaatttta 36766187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 7403500 - 7403567
Alignment:
Q  249 aattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaattt 316  Q
    ||||| |||||||||  |||||||||||||| | ||||||||| ||||||||| ||||||||||||||    
T  7403500 aattaatggaagaaatcttggagattttggactctagattacatattgtaaaactagggttccaattt 7403567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34692023 - 34692069
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||    
T  34692023 attgttttgaaagtaacctagttcttcagcttcatcaacccacacaa 34692069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47385127 - 47385081
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||    
T  47385127 attgtttttaaaataacctagttcttcagcttcatcaacccacacaa 47385081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 48705396 - 48705466
Alignment:
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaa 173  Q
    |||||||||  |||||||||||||||| |||||  |||||||||  |||||||||| ||||||||||||||||    
T  48705396 actttgataattctttttgcccatatgcccacc--ccatcatttcggattcaatttgaacagttttgcttgaa 48705466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 36756551 - 36756663
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| ||||||||||||   |||  | ||||||||| |||| || || |||||| ||||||||||| || |||||  ||||||    
T  36756551 ttagggtttgaagttttttgaattggggaagaactaaaccacttattattggaggaaatttaggtgattttagagtgtagattgcagattgtgtaattag 36756650  T
Q  306 ggttccaatttta 318  Q
    |||| ||||||||    
T  36756651 ggtttcaatttta 36756663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 36762348 - 36762460
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| ||||||||||||   |||  | ||||||||| |||| || || |||||| ||||||||||| || |||||  ||||||    
T  36762348 ttagggtttgaagttttttgaattggggaagaactaaaccacttattattggaggaaatttaggtgattttagagtgtagattgcagattgtgtaattag 36762447  T
Q  306 ggttccaatttta 318  Q
    |||| ||||||||    
T  36762448 ggtttcaatttta 36762460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 46811128 - 46811016
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| ||||||||||||  ||||  | ||||||||| |||| || || |||||| ||||||||||| || | |||  ||||||    
T  46811128 ttagggtttgaagttttttgaattggggaagaactggaccacttattattggaggaaatttaggtgattttagagtgtagattgcagactgtgtaattag 46811029  T
Q  306 ggttccaatttta 318  Q
     ||||||||||||    
T  46811028 agttccaatttta 46811016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24227341 - 24227295
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || ||| |||||||||||||||||||||||||||    
T  24227341 attgtttttaaaatagcctagttcttcagcttcatcaacccacacaa 24227295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 34775878 - 34775836
Alignment:
Q  5 tttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  34775878 tttttaaaataacctagttcttcagcttcatcaacccacacaa 34775836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46438429 - 46438383
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||    
T  46438429 attgtttttaaaataacctagttcttcaacttcatcaacccacacaa 46438383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 23954800 - 23954924
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||| ||| ||||||||||| |||||   |||||||||||| || ||| ||| || |||||  ||||||   |||| ||| ||||||    
T  23954800 caacattcaagcactctaacaacaccattaaacttggagctcgaagatgaagctcgattttcataactgtttttttccatattctcacc-cccgtcattt 23954898  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     ||||||||| |||| ||||||||||    
T  23954899 cagattcaatgtcaatagttttgctt 23954924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 318
Target Start/End: Original strand, 1547363 - 1547450
Alignment:
Q  230 ggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||| |||  ||||||||| |||||  || ||| ||||| |||||| ||||| | ||||||||||||||||| ||||||||    
T  1547363 ggggaagaacgttaccactaattattgaaagaattttggga-attttagagtgtggattaaagattgtaaaattagggtttcaatttta 1547450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22155104 - 22155147
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccaca 44  Q
    |||||||||||| |||||| |||||||| |||||||||||||||    
T  22155104 attgtttttaaaataacctagttcttcaacttcatcaacccaca 22155147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22211019 - 22211062
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccaca 44  Q
    |||||||||||| |||||| |||||||| |||||||||||||||    
T  22211019 attgtttttaaaataacctagttcttcaacttcatcaacccaca 22211062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 47340540 - 47340438
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagc-tctttttgcccatatgaccacctcccatcattttagattcaatttcaacag 162  Q
    |||||||||||||| |||||  |||||||||||||  ||||| ||| |   ||||| |||||||  ||||| ||| ||||||||||||||||||||| ||    
T  47340540 catcaccattaaacttggagtttgaagatgaagctcaactttcataacaatttttttcccatattcccacc-cccttcattttagattcaatttcaatag 47340442  T
Q  163 tttt 166  Q
    ||||    
T  47340441 tttt 47340438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 77261 - 77307
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  77261 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 77307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 40785079 - 40785165
Alignment:
Q  59 tctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcatttt 145  Q
    ||||||||||||||||||| |||||  |||||| |||||| |||||| |||  | |||||  ||||||  ||||| |||||||||||    
T  40785079 tctcacatcaccattaaacttggagcttgaagaagaagctcgactttcataattgtttttttccatattcccaccccccatcatttt 40785165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45360540 - 45360586
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| ||| |||||||||||| ||||||||||    
T  45360540 attgtttttaaaataacctagtttttcagcttcatccacccacacaa 45360586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 46811277 - 46811160
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| || ||  ||||||||||||| |||||| | | |  ||||| |||||||  ||||| ||||||||||||||||  ||||||| ||     
T  46811277 catcaccattaaacttgaagcttgaagatgaagctcgactttcagaacagttttttcccatattcccacc-cccatcattttagattttatttcaatagc 46811179  T
Q  164 tttgcttgaatgaattttg 182  Q
    ||||||| ||  |||||||    
T  46811178 tttgcttcaagaaattttg 46811160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 48851391 - 48851345
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    ||||||||| || ||| || |||||||||||||||||||||||||||    
T  48851391 attgtttttgaaataatctagttcttcagcttcatcaacccacacaa 48851345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 8421839 - 8421727
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | |||||||| ||||||||||||  ||||  | ||||||||| |||| || || ||| || || ||||||||| | |||||  ||||||    
T  8421839 ttagggttttaagttttttgaattggggaagaactggaccacttattattggaggaaatttaggtgatattagaatgtagattatagattgtgtaattag 8421740  T
Q  306 ggttccaatttta 318  Q
    |||| ||||||||    
T  8421739 ggtttcaatttta 8421727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 35342849 - 35342737
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | |||||||| ||||||||||||  |||   | ||||||||| |||| || || ||| || || ||||||||| | |||||  ||||||    
T  35342849 ttagggttttaagttttttgaattggggaagaactggactacttattattggaggaaatttaggtgatattagaatgtagattatagattgtgtaattag 35342750  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  35342749 ggttccaatttta 35342737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 42619919 - 42619598
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42619919 attgtttttaaagtaacctagttcttcaacttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 42619820  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatgaattttg---------gttttcaga 191  Q
    |||||| ||||||      |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  42619819 actttggtagctc------cccatatgaccaccccccatcattttagattcaatttcaacagttttgcttgaatgaattttgcagattttggttttcaga 42619726  T
Q  192 ttcaattnnnnnnn-ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattac 290  Q
    |||||||        |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42619725 ttcaattaaaaaaaattagggtttgcaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattaa 42619626  T
Q  291 acattgtaaaattagggttccaatttta 318  Q
    ||||||||||||||||||||||||||||    
T  42619625 acattgtaaaattagggttccaatttta 42619598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 1344479 - 1344591
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| |||||||||||||| |||   ||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||    
T  1344479 ttagggtttgaagttttttgaattggggaagaacgttaccaccaattattggaagaaattttggagattttggagtgtagattaaagattgtaaaattag 1344578  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  1344579 ggttccaatttta 1344591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 40330010 - 40330135
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||||||||||||||| ||||   ||||||||||||| |||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  40330010 caacattcaagcactctcacatcaccattaaacttggaaattgaagatgaagctcgactttcataactattttttcccatatttccaccccccatcattt 40330109  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     ||| |||||||||| ||||||||||    
T  40330110 cagaatcaatttcaatagttttgctt 40330135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 38177225 - 38177102
Alignment:
Q  47 acatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcatttta 146  Q
    ||||| ||||||||||||| ||||||||||| |||||   |||||||||||| |||||| ||| || ||||| |||||||  ||||| |||||||||| |    
T  38177225 acattcaagcactctcacaacaccattaaacttggagctcgaagatgaagctcgactttcataactattttttcccatatttccaccccccatcatttca 38177126  T
Q  147 gattcaatttcaacagttttgctt 170  Q
    ||||||||||||| ||||||||||    
T  38177125 gattcaatttcaatagttttgctt 38177102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 38204449 - 38204326
Alignment:
Q  47 acatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcatttta 146  Q
    ||||| ||||||||||||| ||||||||||| |||||   |||||||||||| |||||| ||| || ||||| |||||||  ||||| |||||||||| |    
T  38204449 acattcaagcactctcacaacaccattaaacttggagctcgaagatgaagctcgactttcataactattttttcccatatttccaccccccatcatttca 38204350  T
Q  147 gattcaatttcaacagttttgctt 170  Q
    ||||||||||||| ||||||||||    
T  38204349 gattcaatttcaatagttttgctt 38204326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 35291638 - 35291514
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||| ||||||||||||||||| |||||  |||||||||| ||||||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  35291638 caacattcaagcactatcacatcaccattaaacttggagcttgaagatgaaacttgactttcataactgttttttcccatattcccacc-cccatcattt 35291540  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||| ||||||||| ||||||||||    
T  35291539 cagatccaatttcaatagttttgctt 35291514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 43317323 - 43317198
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||||||||||||||| |||||  ||||||||||||| |||||| ||| || |||||  ||||||  ||||| ||||||||||    
T  43317323 caacattcaagcactctcacatcaccattaaacttggagtttgaagatgaagctcgactttcataactgtttttttccatattcccaccccccatcattt 43317224  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||| ||||||||  ||||||||||    
T  43317223 cagatccaatttcactagttttgctt 43317198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 32836470 - 32836346
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||| ||||||||||| |||||   |||||||||||| |||||| ||| || ||||| | |||||  ||||| ||||||||||    
T  32836470 caacattcaagcactctcacaacaccattaaacttggagctcgaagatgaagctcgactttcataactgttttttcacatattcccacc-cccatcattt 32836372  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||||||||||||| ||||||||||    
T  32836371 cagattcaatttcaatagttttgctt 32836346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 24497759 - 24497857
Alignment:
Q  220 tttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||| |||||||||||||| | | || |||||||||||||| |||||  |||||||||||||||||||  ||||||||||||| ||| ||||||||    
T  24497759 tttttgaattggggaagaacgttatcattgattattggaagaaattttgggaattttggagtgtagattacttattgtaaaattagagtttcaatttta 24497857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 18727158 - 18727033
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||| ||||||||||| |||||  |||||||||||||| ||||| ||| |  ||||| || ||||  ||||| | ||||||||    
T  18727158 caacattcaagcactctcacaacaccattaaacttggagcttgaagatgaagctttactttcataaccgttttttcctatattcccaccccacatcattt 18727059  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||||||||||||| ||| ||||||    
T  18727058 cagattcaatttcaatagtcttgctt 18727033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 32089417 - 32089545
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||| ||||||||||| |||||  |||||||||||||||||||| ||| |  ||||| |||||||  ||||| | ||||||||    
T  32089417 caacattcaagcactctcacaacaccattaaacttggagcttgaagatgaagcttgactttcataaccgttttttcccatattcccaccccacatcattt 32089516  T
Q  145 t--ag-attcaatttcaacagttttgctt 170  Q
    |  || |||||||||||| ||||||||||    
T  32089517 tgaagtattcaatttcaatagttttgctt 32089545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 1343613 - 1343501
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||| | |||||||| ||||| |||  ||| |||||||||||| ||||||||||||||||||||| ||| | ||| |||||||||    
T  1343613 ttagggtttggagttttttaaattggggaaaaacgttaccactaactattggaagaaattttggagattttggagtgtagtttaaagattataaaattag 1343514  T
Q  306 ggttccaatttta 318  Q
    |||  ||||||||    
T  1343513 ggtgtcaatttta 1343501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 18341599 - 18341737
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||| ||| |||||||| |||||||| |||  ||| |||||||||  | ||||| | || |||||||||||| ||||||| ||||||||||    
T  18341599 caacattcaagcattcttacatcaccgttaaacatagagtttgaggatgaagctcaagtttgagaactgtttttgcccatacgaccaccacccatcattt 18341698  T
Q  145 tagattcaatttcaacagttttgcttgaatgaattttgg 183  Q
     ||||||||| | |||| ||||| |||||  ||||||||    
T  18341699 cagattcaatctgaacaattttgattgaagaaattttgg 18341737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 35400226 - 35400329
Alignment:
Q  67 caccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagtttt 166  Q
    ||||||||||| |||||  |||||||||| ||||||||| | | |  ||||| |||||||  ||||| |||||||||| |||||||||||||| ||||||    
T  35400226 caccattaaacttggagtttgaagatgaaacttgactttcaaaacctttttttcccatattcccaccccccatcatttcagattcaatttcaatagtttt 35400325  T
Q  167 gctt 170  Q
    ||||    
T  35400326 gctt 35400329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 40330182 - 40330294
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||  | ||| |||| |||||||||| |  ||||  | ||||||||| |||| ||| | |||||||||||||||||| || |||||  ||||||    
T  40330182 ttagggtttcaagtttgttgaattggggaagagctggaccacttattattggaggaaatttttgtgattttggagtgtagattgcatattgtgtaattag 40330281  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  40330282 ggttccaatttta 40330294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 318
Target Start/End: Original strand, 6116608 - 6116679
Alignment:
Q  247 ttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||| ||||||||| ||||| |||||| || ||||||||| | |||| |||||||||||| ||||||||    
T  6116608 ttaattaatggaagaaattttggggatttttgactgtagattagagattgaaaaattagggtttcaatttta 6116679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28821598 - 28821644
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || ||| |||||||||||||||||||||||||||    
T  28821598 attgtttttaaaatagcctagttcttcagcttcatcaacccacacaa 28821644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 32836300 - 32836192
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| |||||||||||| ||||| || ||  ||||| || | ||||| ||||||  |||||| ||| || |||||  ||||||    
T  32836300 ttagggtttgaagttttttgaattggggaagaacttgaccatttatatttggaggatattttggtgattttatagtgtaaattgcagattgtgtaattag 32836201  T
Q  306 ggttccaat 314  Q
    |||||||||    
T  32836200 ggttccaat 32836192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2180975 - 2181018
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccaca 44  Q
    |||||||||||| |||||| |||||||| |||||||||||||||    
T  2180975 attgtttttaaaataacctagttcttcaacttcatcaacccaca 2181018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18624235 - 18624192
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccaca 44  Q
    |||||||||||| |||||| |||||| |||||||||||||||||    
T  18624235 attgtttttaaaataacctagttctttagcttcatcaacccaca 18624192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 27076963 - 27077062
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||| |||||||||||||||||||| || |||  |||||||||||   |||| | |||| | ||||||| |||| | ||||| ||||||||||    
T  27076963 caacattcaagtactctcacatcaccattaaaaatagagcttgaagatgaagaccgactattatagttatttttgcacatacgcccaccacccatcattt 27077062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17575140 - 17575186
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  17575140 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 17575186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17577171 - 17577217
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  17577171 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 17577217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21842205 - 21842251
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  21842205 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 21842251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34328127 - 34328173
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || ||| |||| ||||||||||||||||||||||    
T  34328127 attgtttttaaaatagcctagttcctcagcttcatcaacccacacaa 34328173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 35291469 - 35291387
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagatt 288  Q
    |||||||||| | |||| ||| ||||||||||||  ||||  | |||| |||| |||| ||||| ||||||||||||||||||    
T  35291469 ttagggtttgaagttttgtgaattggggaagaaccggaccacttattactggaggaaattttggtgattttggagtgtagatt 35291387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42472403 - 42472357
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  42472403 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 42472357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 18726986 - 18726874
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttgga-gattttggagtgtagattacacattgtaaaatta 304  Q
    |||||||||| | |||||||| |||||| |||||   |||  | ||||||||| ||||||||  | |||| | |||||||||||||| |||||  |||||    
T  18726986 ttagggtttgaagttttttgaattggggcagaactgaaccacttattattgga-gaaaattttcatgattatagagtgtagattacagattgtgtaatta 18726888  T
Q  305 gggttccaatttta 318  Q
    ||||||||||||||    
T  18726887 gggttccaatttta 18726874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 38 - 318
Target Start/End: Original strand, 41945593 - 41945881
Alignment:
Q  38 acccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctccc 137  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41945593 acccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacccccc 41945692  T
Q  138 atcattttagattcaatttcaacagttttgcttgaatga--------attttggttttcagattcaattnnnnnnnttagggtttgtaattttttgattt 229  Q
     |||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||||||       ||||| |||| |||||||||||||    
T  41945693 ttcattttagattcaatttcaacagttttgcttgaataattttgcagattttggttttcagattcaattaaaaaaattaggatttgcaattttttgattt 41945792  T
Q  230 ggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41945793 ggggaagaacgtgacccttaattattggaagaaaatttagagattttggagtgtagattacacatcgtaaaattagggttccaatttta 41945881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 37886411 - 37886237
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 100  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37886411 attgtttttaaagtaatctagttcttcagcttcatcaacccacacaacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttg 37886312  T
Q  101 actttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttgcttgaatg 175  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  37886311 actttgatagctctttttgcccatatgaccacccctcatcattttagattcaatttcaacagttttgcttgaatg 37886237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 37865805 - 37865693
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37865805 ttagggttcgcaattttttgatttggggaagaacgtgacccttaattattagaagaaaatttggagattttggagtgtagattacacattgtaaaattag 37865706  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  37865705 ggttccaatttta 37865693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 318
Target Start/End: Complemental strand, 26448338 - 26448058
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| || ||||||||||||||||||||| ||||||  ||||| |||||||||||||||||| |||||| |||||||||| ||||| | ||||||||    
T  26448338 caacattcaaacactctcacatcaccattaaagatggagcttgaaggtgaagcttgactttgataactctttgtgcccatatgcccacc-ctcatcattt 26448240  T
Q  145 tagattcaatttcaacagttttgcttgaatgaattt---------tggttttcagattcaattnnnnnnnttagggtttgtaattttttgatttggggaa 235  Q
     ||||||||||| ||||||||||||||||  |||||         ||||||| |||||||||        |||||||||| | |||||||| ||| | ||    
T  26448239 cagattcaatttgaacagttttgcttgaagaaattttgggtattctggtttttagattcaataaaaaaaattagggtttgaagttttttgaattgagaaa 26448140  T
Q  236 gaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    | |||| |||  |||||||||||||||| ||| | | ||||||||| ||||| | | |||||||||||| |||||||||||||    
T  26448139 ggacgttaccactaattattggaagaaattttag-ggttttggagtatagataaaatattgtaaaattaaggttccaatttta 26448058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 45 - 318
Target Start/End: Original strand, 1847160 - 1847443
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| |||| |||||||||||||||||||| |||||  ||||||||||||| |||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  1847160 caacattcaagctctctcacatcaccattaaacttggagcttgaagatgaagctcgactttcataactgttttttcccatattcccaccccccatcattt 1847259  T
Q  145 tagattcaatttcaacagttttgcttgaa-------tga--attttggttttcagattcaat-tnnnnnnnttagggtttgtaattttttgatttgggga 234  Q
     ||||||||| |||| |||||||||| ||       |||  ||||||| ||||| |||||||         |||||||||||| |||||| | |||||||    
T  1847260 cagattcaatatcaatagttttgcttcaagaaattttgaggattttggctttcaaattcaatacgaaaaaattagggtttgtagttttttaaattgggga 1847359  T
Q  235 agaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||   ||| ||  |||||||| |||| ||||| ||||||| ||||||||||||| |||||  |||||||||||||||||||    
T  1847360 agaactgaaccattttttattggatgaaattttggtgattttgaagtgtagattacaaattgtgtaattagggttccaatttta 1847443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 318
Target Start/End: Original strand, 40963055 - 40963167
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| |||||||||||||| |||  ||||||||| |||||| |||||  |||||||||||||||||| | |||||||||||||    
T  40963055 ttagggtttgaatttttttgaattggggaagaacgttaccactaattattgtaagaaattttgggaattttggagtgtagattaaagattgtaaaattag 40963154  T
Q  306 ggttccaatttta 318  Q
    |||||||||||||    
T  40963155 ggttccaatttta 40963167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 33112435 - 33112309
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgacca-cctcccatcatt 143  Q
    ||||||| ||||||||||||||||||||||||| |||||  ||||||||||||| |||||| ||| || ||||| |||||||  ||| || |||||||||    
T  33112435 caacattcaagcactctcacatcaccattaaacttggagtttgaagatgaagctcgactttcataactgttttttcccatattcccacccccccatcatt 33112336  T
Q  144 ttagattcaatttcaacagttttgctt 170  Q
    | |||| ||||||||| ||||||||||    
T  33112335 tcagatccaatttcaatagttttgctt 33112309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 30501509 - 30501410
Alignment:
Q  219 ttttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||| ||||||||| |||| |||  ||||||||| |||||| |||||  |||||||||||||||||| | ||||||||||||||||||||||||||    
T  30501509 ttttttgaattggggaagtacgttaccactaattattgaaagaaattttgggaattttggagtgtagattaaagattgtaaaattagggttccaatttta 30501410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 2976019 - 2975894
Alignment:
Q  44 acaacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcatt 143  Q
    |||||||| ||||| ||||||||||||||||||| ||||   ||||||||||||| |||||||||| || ||||| |||||||  ||||| |  ||||||    
T  2976019 acaacattcaagcaatctcacatcaccattaaacttggaacttgaagatgaagctcgactttgataactgttttt-cccatattcccaccccttatcatt 2975921  T
Q  144 ttagattcaatttcaacagttttgctt 170  Q
    | |||||||||||||| ||||||||||    
T  2975920 tcagattcaatttcaatagttttgctt 2975894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 48634872 - 48634994
Alignment:
Q  48 catttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttag 147  Q
    |||| ||||||||||||| ||||||||||| |||||   |||||||||||| |||||| ||| || |||||  ||||||  ||||| |||||||||| ||    
T  48634872 cattcaagcactctcacaacaccattaaacttggagctcgaagatgaagctcgactttcataactgtttttttccatattcccaccccccatcatttcag 48634971  T
Q  148 attcaatttcaacagttttgctt 170  Q
    |||||||||||| ||||||||||    
T  48634972 attcaatttcaatagttttgctt 48634994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 45897634 - 45897508
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgat-agctctttttgcccatatgaccacctcccatcatt 143  Q
    ||||||| ||||||||||||| ||||||||||| |||||  |||||||||||||||||||| || | |  ||||| |||||||  ||||| | |||||||    
T  45897634 caacattcaagcactctcacaacaccattaaacttggagcttgaagatgaagcttgacttttataaccgtttttttcccatattcccaccccacatcatt 45897535  T
Q  144 ttagattcaatttcaacagttttgctt 170  Q
    | | |||||||||||| ||||||||||    
T  45897534 tcatattcaatttcaatagttttgctt 45897508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 23775149 - 23775274
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||||| ||||||| ||| | |||   |||||||||||| |||||| ||| || ||||| |||||||  ||| | ||||||||||    
T  23775149 caacattcaagcactctcacaacaccattgaacttagagctcgaagatgaagctcgactttcataactgttttttcccatattcccatcccccatcattt 23775248  T
Q  145 tagattcaatttcaacagttttgctt 170  Q
     |||||||||||||| ||||||||||    
T  23775249 cagattcaatttcaatagttttgctt 23775274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 318
Target Start/End: Complemental strand, 49494896 - 49494800
Alignment:
Q  222 tttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||| |||||||||||||| |||  |||||||||||||||  |||||  |||||||||||| |||||   ||||||||||||||||||||||||||    
T  49494896 tttgaattggggaagaacgttaccactaattattggaagaatttttgggaattttggagtgtggattaatgattgtaaaattagggttccaatttta 49494800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 318
Target Start/End: Complemental strand, 32843015 - 32842740
Alignment:
Q  53 aagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattca 152  Q
    ||||| ||| |||||||||||||||||  ||  ||||||||||||| |||||||| | ||  | ||||||||| | ||||| ||||||||||   |||||    
T  32843015 aagcattctgacatcaccattaaacataaagtttgaagatgaagctcgactttgagaacttgtgttgcccatacgcccaccacccatcatttcgcattca 32842916  T
Q  153 atttcaacagttttgcttgaat---------gaattttggttttcagattcaattnnnnnnn-ttagggtttgtaattttttgatttggggaagaacgtg 242  Q
    || | |||| ||||||||||||         | ||||||| |||||||||||||         |||||||||| | ||||| ||  |  ||||||||||     
T  32842915 atctgaacaattttgcttgaattttttttggggattttggatttcagattcaatcaaaacaaattagggtttgaagtttttagaagtaaggaagaacgtt 32842816  T
Q  243 acccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
      | ||||||| ||||||||| |||||  |||||||| ||||||||| | |||| |||||||||||||||||||||    
T  32842815 gtcattaattaatggaagaaattttgggaattttggattgtagattagagattgaaaaattagggttccaatttta 32842740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 35862124 - 35862027
Alignment:
Q  56 cactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaa 153  Q
    |||||||||||||||||||||||| |||  ||||||||||  |  |||||||||  | |||||||||||| | ||||| |||||||||| ||||||||    
T  35862124 cactctcacatcaccattaaacatagagcttgaagatgaaaatcaactttgataattgtttttgcccatacgtccaccacccatcatttcagattcaa 35862027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 2975882 - 2975802
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtaga 286  Q
    |||||||||| | |||||||| ||||||||||||  ||||  | |||||||||||||| ||||| ||||||||||||||||    
T  2975882 ttagggtttgaagttttttgaattggggaagaactggaccgcttattattggaagaaattttggtgattttggagtgtaga 2975802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2378213 - 2378259
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||    
T  2378213 attgtttttaaaataacctagttcttcagcttcatcaacccacacaa 2378259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 31886088 - 31885987
Alignment:
Q  68 accattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagttttg 167  Q
    |||||||||| ||||   ||||||||||||| |||||| ||| || ||||| |||||||  ||||| ||| ||||||||||||||||||||| ||| |||    
T  31886088 accattaaacttggatcttgaagatgaagctcgactttcataactgttttttcccatattcccacc-cccgtcattttagattcaatttcaatagtcttg 31885990  T
Q  168 ctt 170  Q
    |||    
T  31885989 ctt 31885987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 31885941 - 31885829
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||| | ||||||||||||   |||  | ||||||||| |||| ||||| |||||| ||||||||||| || |||||  ||||||    
T  31885941 ttagggtttgaagttttttcaattggggaagaactgaaccacttattattggaggaaattttggtgattttagagtgtagattgcagattgtgtaattag 31885842  T
Q  306 ggttccaatttta 318  Q
     ||||||||||||    
T  31885841 agttccaatttta 31885829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 318
Target Start/End: Complemental strand, 33851555 - 33851293
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaacagt 163  Q
    |||||||||||||| |||||  ||||||||||||| |||||| ||| |  ||||| |||| ||  ||||| ||| |||||| |||||||||||||| |||    
T  33851555 catcaccattaaacttggagcttgaagatgaagctcgactttcataacaattttttcccagat-tccaccccccttcatttcagattcaatttcaatagt 33851457  T
Q  164 tttgcttgaa---------tgaattttggttttcagattcaat-tnnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaatta 253  Q
    ||| ||| ||         || ||||||| |||||||||||||         |||||||||  |||||||||| ||||||||||||  ||||  | ||||    
T  33851456 ttttcttcaagaaattttgtggattttggctttcagattcaatacaaaaaaattagggtttcaaattttttgaattggggaagaactggaccacttatta 33851357  T
Q  254 ttggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||| |||| || || |||||| || |||||||| || |||||  ||||| |||||||||||||    
T  33851356 ttggaggaaatttaggtgattttagaatgtagattgcagattgtgtaatta-ggttccaatttta 33851293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21349918 - 21349964
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || ||| |||||||||||||||||||||||||||    
T  21349918 attgtttttaaaatagcctagttcttcagcttcatcaacccacacaa 21349964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 24382293 - 24382183
Alignment:
Q  60 ctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattttagattcaatttcaa 159  Q
    ||||||||||||||| || |||||  | ||||||||| |  ||||| ||| |  |||||  ||||||  ||||| |||||||||| ||||||||||||||    
T  24382293 ctcacatcaccattatacttggagcttcaagatgaagttaaactttcataacagtttttttccatattcccaccccccatcatttcagattcaatttcaa 24382194  T
Q  160 cagttttgctt 170  Q
     ||||||||||    
T  24382193 tagttttgctt 24382183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27898035 - 27897989
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||||    
T  27898035 attgtttttaaaataacctagttcttcaacttcatcaacccacacaa 27897989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 33051146 - 33051236
Alignment:
Q  228 ttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||||||||| || |||  ||||||||||||||   |||||| |||||||||||| ||||| | |||||| ||||| |||||| ||||||    
T  33051146 ttggggaagaatgttaccactaattattggaagattttttggaaattttggagtgtggattaaatattgtataattatggttcctatttta 33051236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 318
Target Start/End: Complemental strand, 45256058 - 45255794
Alignment:
Q  64 catcaccattaaacatggaggatgaagatgaagcttgactttgatagc--tctttttgcccatatgaccacctcccatcattttagattcaatttcaaca 161  Q
    |||||||||||||| |||||  |||| |||||||| |||||| ||| |  | ||||| |||||||   |||| ||| |||||| |||||||||||||| |    
T  45256058 catcaccattaaacttggagcttgaaaatgaagctcgactttcataacaattttttttcccatattctcacc-cccttcatttcagattcaatttcaata 45255960  T
Q  162 gttttgcttgaa---------tgaattttggttttcagattcaattnnnnnnnttagggtttgtaattttttgatttggggaagaacgtgacccttaatt 252  Q
    |||||| || ||         || ||||||| |||||||||||||        |||||||||  | |||||||| ||||||||||||  ||||  | |||    
T  45255959 gttttgtttcaagaaattttgtggattttggctttcagattcaatacgaaaaattagggtttcaagttttttgaattggggaagaactggaccacttatt 45255860  T
Q  253 attggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||| |||| || || |||||| || |||||||| || |||||  ||||||||||| |||||||    
T  45255859 attggaggaaatttaggtgattttagaatgtagattgcagattgtgtaattagggttcaaatttta 45255794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 10380605 - 10380713
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| |  ||||||| ||||||||||||  |||| || || |||||| || | ||||||||||||  |||||| |||||| |||||  ||||||    
T  10380605 ttagggtttgaagatttttgaattggggaagaactggaccatttataattggaggatattttggagattttaaagtgtaaattacagattgtgtaattag 10380704  T
Q  306 ggttccaat 314  Q
    |||| ||||    
T  10380705 ggtttcaat 10380713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 13466609 - 13466708
Alignment:
Q  46 aacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcatttt 145  Q
    |||||| ||| ||||||||||||||||||||||| |||  | |||||||||   |||| | |||||| |||||||||||  | ||||  |||||||||||    
T  13466609 aacattcaagtactctcacatcaccattaaacatagagcttcaagatgaaggccgactattatagctgtttttgcccatgcgcccacaacccatcatttt 13466708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 24846049 - 24846148
Alignment:
Q  45 caacatttaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 144  Q
    ||||||| ||||||||||| |||||||||  |||| |||  |||||||||||   |||| |  ||||| |||||||||||| | ||||| ||||||||||    
T  24846049 caacattgaagcactctcatatcaccattgtacatagagcttgaagatgaagaccgactattgtagctgtttttgcccatacgtccaccacccatcattt 24846148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13466409 - 13466455
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| | |||||||||||||||||||| ||||    
T  13466409 attgtttttaaaataacctagctcttcagcttcatcaacccagacaa 13466455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35904669 - 35904623
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| || |||  ||||||||||||||||||||||||||    
T  35904669 attgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 35904623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44275138 - 44275092
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    ||||||| |||| || ||| |||||||||||||||||||||||||||    
T  44275138 attgtttgtaaaatagcctagttcttcagcttcatcaacccacacaa 44275092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 46198943 - 46198989
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| ||  || |||||||||||||||||||||||||||    
T  46198943 attgtttttaaaataggctagttcttcagcttcatcaacccacacaa 46198989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 10380517 - 10380558
Alignment:
Q  129 ccacctcccatcattttagattcaatttcaacagttttgctt 170  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||    
T  10380517 ccaccccccatgattttagattcaatttcaatagttttgctt 10380558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 30501601 - 30501564
Alignment:
Q  136 ccatcattttagattcaatttcaacagttttgcttgaa 173  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  30501601 ccatcatttcagattcaatttgaacagttttgcttgaa 30501564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 53188619 - 53188574
Alignment:
Q  2 ttgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    ||||||||||| || |||  ||||||||||||||||||||||||||    
T  53188619 ttgtttttaaaatagcctaattcttcagcttcatcaacccacacaa 53188574  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 48635040 - 48635148
Alignment:
Q  206 ttagggtttgtaattttttgatttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattag 305  Q
    |||||||||| | |||||||| ||||||||||||  |||| || || |||||| || | ||| | |||||| ||||||| |||  | |||||  ||||||    
T  48635040 ttagggtttgaagttttttgaattggggaagaactggaccatttataattggaggatattttagtgattttagagtgtaaattgtagattgtgtaattag 48635139  T
Q  306 ggttccaat 314  Q
    |||||||||    
T  48635140 ggttccaat 48635148  T

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Target: scaffold0006 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 37977 - 38067
Alignment:
Q  228 ttggggaagaacgtgacccttaattattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||||||||||| |||  |||||||||||||||  |||||  |||||||||||| |||||   ||||||||||||||||||||||||||    
T  37977 ttggggaagaacgttaccactaattattggaagaatttttgggaattttggagtgtggattaatgattgtaaaattagggttccaatttta 38067  T

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Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 37877 - 37923
Alignment:
Q  137 catcattttagattcaatttcaacagttttgcttgaatgaattttgg 183  Q
    |||||||| |||||||||| ||||||||||| ||||| |||||||||    
T  37877 catcatttcagattcaattacaacagttttgtttgaaggaattttgg 37923  T

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Target: scaffold0345 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 760 - 806
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||    
T  760 attgtttttaaaataacctagttcttcagcttcatcaactcacacaa 806  T

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Target: scaffold0070 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 57758 - 57690
Alignment:
Q  250 attattggaagaaaatttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    |||||| ||||||| |||||  |||||||||||||||||||| || ||| ||| |||||| ||||||||    
T  57758 attattcgaagaaattttggttattttggagtgtagattacagatagtataatcagggtttcaatttta 57690  T

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Target: scaffold0920 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1440 - 1401
Alignment:
Q  1 attgtttttaaagtaaccttgttcttcagcttcatcaacc 40  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  1440 attgtttttaaaataacctagttcttcagcttcatcaacc 1401  T

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Target: scaffold1041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 2636 - 2689
Alignment:
Q  265 tttggagattttggagtgtagattacacattgtaaaattagggttccaatttta 318  Q
    ||||| ||||||||||||||||||||| || ||| |||||| |||||| |||||    
T  2636 tttggtgattttggagtgtagattacatatagtataattagagttccagtttta 2689  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 107502 - 107461
Alignment:
Q  6 ttttaaagtaaccttgttcttcagcttcatcaacccacacaa 47  Q
    ||||||| |||||| |||||||| ||||||||||||||||||    
T  107502 ttttaaactaacctagttcttcaacttcatcaacccacacaa 107461  T

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