View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20258_low_5 (Length: 230)
Name: NF20258_low_5
Description: NF20258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20258_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4236793 - 4236564
Alignment:
| Q |
1 |
atgaaaccatgttgaaattcgaaaggattattcaaggtatggcggctagtagtcttcgttgcctcgctttagcgtatacaaaagttacagacgaagagct |
100 |
Q |
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| T |
4236793 |
atgaaaccatgttgaaattcgaaaggattattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagct |
4236694 |
T |
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| Q |
101 |
tgaagttgaaggagatatgaacaagatggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaag |
200 |
Q |
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| T |
4236693 |
tgaagttgaaggagatatgaacaagatggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaag |
4236594 |
T |
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| Q |
201 |
acggcagtggaagcttgccaacatgctggt |
230 |
Q |
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| T |
4236593 |
acgacagtggaagcttgccaacatgctggt |
4236564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 6185874 - 6185661
Alignment:
| Q |
13 |
tgaaattcgaaaggattattcaaggtatggcggctagtagtcttcgttgcctcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaagg |
112 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||| |||||||| |||| | | |||||| |
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| T |
6185874 |
tgaaattcgaaagcattattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaagg |
6185775 |
T |
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| Q |
113 |
agatatgaacaagatggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacggcagtggaa |
212 |
Q |
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| T |
6185774 |
agacaacaccaagatggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaa |
6185675 |
T |
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| Q |
213 |
gcttgccaacatgc |
226 |
Q |
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| T |
6185674 |
gcttgccaacatgc |
6185661 |
T |
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