View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20259_high_1 (Length: 459)
Name: NF20259_high_1
Description: NF20259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20259_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 6 - 444
Target Start/End: Complemental strand, 31689030 - 31688592
Alignment:
| Q |
6 |
gttgcatgaaggggagagagattagcatccgatatgaatataaatgagatatttttattgtatcattgtcgaagtactcatctctagccaaatctattca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31689030 |
gttgcatgaaggggagagagattagcatccgatatgaatataaatgagatatttttattgtatcattgtcgaagtactcatctctagccaaatctattca |
31688931 |
T |
|
| Q |
106 |
atttcatagacgataacgacgatttgctattgacttaat-ttttgtaagagactttcagtttcaagttataagagaacaattgtaacttttgtgatttta |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31688930 |
atttcatagacgataacgacgatttgctattgacttaattttttgtaagagactttcagtttcaagttataagagaacaattgtaacttttatgatttta |
31688831 |
T |
|
| Q |
205 |
catttcttaaatcctttattttacacgtaaaaaatagtccnnnnnnnncctttacttttccattaaccttatccattttatatctactattcatcttcaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31688830 |
catttcttaaatcctttattttacacgtaaaaaatagtccttttttttcctttacttttccattaaccttatccattttatatctactattcatcttcaa |
31688731 |
T |
|
| Q |
305 |
tattgtctccaaatttttaacagggatgtagcagttaaaataaattgaaatagataaatcaataagcaaaaaatagtagttgaaaagttggatatatatg |
404 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31688730 |
tattgtctccaaatttttaagagggatgtagcagttaaaataaattgaaatagataaatcaataagc-aaaaatagtagttgaaaagttggatatatatg |
31688632 |
T |
|
| Q |
405 |
gactaaatttttaactcaactatgatttttgcttatattt |
444 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31688631 |
gactaaatttttaactcaactatgaattttgcttatattt |
31688592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 12559055 - 12559005
Alignment:
| Q |
366 |
ataagcaaaaaatagtagttgaaaagttggatatatatggactaaatttttaa |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
12559055 |
ataagcaaaaaag-gtagttgaaaagttg-atgtatatggactaaatttttaa |
12559005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University