View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20259_high_3 (Length: 356)
Name: NF20259_high_3
Description: NF20259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20259_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 7668912 - 7668587
Alignment:
| Q |
18 |
tgcggttgtgtcaaatgcattatggattcacgaaaaa-tggcctttacctcaagaaaagtataaaaa-cggttaatttgttttctttcttatttgatgtt |
115 |
Q |
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| T |
7668912 |
tgcggttgtgtcagatgcattatggattcacgaaaaaatggcctttacctcaagaaaagtataaaaaacggttaatttgttttctttcttatttgatgtt |
7668813 |
T |
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| Q |
116 |
taaacttgaaggtatagagtgttcttgggcttgaaccagtactttgttgcttcagatgttggttacgggaagatgcaatggtatgcctttcacggggaac |
215 |
Q |
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| T |
7668812 |
taaacttgaaggtatagagtgttcttgggcttgaaccagtactttgttgcttcagatgttggttacgggaagatgcaatggtatgcttttcacggggaac |
7668713 |
T |
|
| Q |
216 |
ccccttcacgcggccatttcccagaaggtatatttactctttgtgtcaatctatgtcccaccgacacttcaaattgaaagcaggtttgagtgttcgacac |
315 |
Q |
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| T |
7668712 |
ccccttcacgcggccatttcccagaaggtatatttactctttgtgtcaatctatatcccaccgacacttcaaattgaaagcaggtttgagtgttcgacac |
7668613 |
T |
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| Q |
316 |
atgttactagtgtctacatgtcgtgt |
341 |
Q |
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| T |
7668612 |
atgttactagtgtctacatgtcgtgt |
7668587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 344
Target Start/End: Original strand, 32789109 - 32789433
Alignment:
| Q |
21 |
ggttgtgtcaaatgcattatggattcacgaaaaatggcctttacctcaagaaaagt---ataaaaacggttaatttgttttctttcttatttgatgttta |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||| ||||| |||||||||||||||| |
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| T |
32789109 |
ggttgtgtcaaatgcattatcgattcacgaaaaatggcctttacctcgagaaaagatggataaaagaatgtaataagtttt---tcttatttgatgttta |
32789205 |
T |
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| Q |
118 |
aacttgaaggtatagagtgttcttgggcttgaaccagtactttgttgcttcagatgttggttacgggaagatgcaatggtatgcctttcacgggga-acc |
216 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||| |
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| T |
32789206 |
aacttgaaggtatagggtgttcttgggcttgaaccggtactttgttgcttcagatgttggttatgggaagatgcaatggtatgcttttcacgggaacacc |
32789305 |
T |
|
| Q |
217 |
cccttcacgcggccatttcccagaaggtatatttactctttgtgtcaatctatgtcccaccgacacttcaaattgaaagcaggtttgagtgttcgacaca |
316 |
Q |
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||||||| | |||| |||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32789306 |
cccttcatgtggccctttcccggaagatatatttactctttgtgacaatctatgtcacaccgacacttcaaattgaaagcagctttgagtgttcgacaca |
32789405 |
T |
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| Q |
317 |
tgttactagtgtctacatgtcgtgtctg |
344 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32789406 |
tgttactagtgtctacatgtcgtgtctg |
32789433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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