View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20259_low_2 (Length: 383)

Name: NF20259_low_2
Description: NF20259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20259_low_2
NF20259_low_2
[»] chr3 (2 HSPs)
chr3 (9-367)||(30261101-30261458)
chr3 (9-47)||(8769375-8769413)
[»] chr5 (2 HSPs)
chr5 (16-47)||(5147413-5147444)
chr5 (9-47)||(15898630-15898668)
[»] chr6 (1 HSPs)
chr6 (9-47)||(29444192-29444230)
[»] chr4 (2 HSPs)
chr4 (9-47)||(5499349-5499387)
chr4 (125-158)||(35594674-35594707)
[»] chr2 (2 HSPs)
chr2 (9-47)||(37528988-37529026)
chr2 (19-51)||(36748310-36748342)
[»] chr1 (3 HSPs)
chr1 (9-47)||(25983551-25983589)
chr1 (9-47)||(35622671-35622709)
chr1 (14-47)||(24131318-24131351)
[»] chr7 (1 HSPs)
chr7 (9-53)||(37264464-37264508)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 30261458 - 30261101
Alignment:
Q  9 atgaacaaaagactcagttaaaatgggacggagggagtagttaacaagagtacaactgtttgataacattggtcattgtcggttgtcatgagtaccctct 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30261458 atgaacaaaaggctcagttaaaatgggacggagggagtagttaacaagagtacaactgtttgataacattggtcattgtcggttgtcatgagtaccctct 30261359  T
Q  109 ctttctagtatggtgctgtgtttactatatgagatcataatctttgtatcctctgtgcgttttaaaaaatgattgcagtgaattggaagtggtttgtgga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  30261358 ctttctagtatggtgctgtgtttactatatgagatcataatctttgtatcctc--tgcgttttaaaaaatgattgcagtgaattggaagtggtctgtgga 30261261  T
Q  209 ctgtgatcttcaaatcacctttgtttggtactgaacaattcagttctttcctttatatggttactaatgtaattgacccttgtcaagcatggtatagta- 307  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  30261260 ctgtgatcttcaaatcacctttatttggtactgaacaatttagttctttcctttatatggttactaatgtaattgacccttgtcaagcatgggatagtat 30261161  T
Q  308 ttcactcgtatgtagtgtatgatccaacctgacaagattgctactgtattcactcataag 367  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30261160 ttcactcgtatatagtgtatgatccaacctgacaagattgctactgtattcactcataag 30261101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 8769375 - 8769413
Alignment:
Q  9 atgaacaaaagactcagttaaaatgggacggagggagta 47  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  8769375 atgaacaaaaaactcagttaaaatgggacggaaggagta 8769413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 5147444 - 5147413
Alignment:
Q  16 aaagactcagttaaaatgggacggagggagta 47  Q
    ||||||||||||||||||||||||||||||||    
T  5147444 aaagactcagttaaaatgggacggagggagta 5147413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 15898630 - 15898668
Alignment:
Q  9 atgaacaaaagactcagttaaaatgggacggagggagta 47  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  15898630 atgaactaaagactcatttaaaatgggacggagggagta 15898668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 29444192 - 29444230
Alignment:
Q  9 atgaacaaaagactcagttaaaatgggacggagggagta 47  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  29444192 atgaacaaaagactcagttaatatggaacggagggagta 29444230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 5499387 - 5499349
Alignment:
Q  9 atgaacaaaagactcagttaaaatgggacggagggagta 47  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  5499387 atgaacaaaaggctcggttaaaatgggacggagggagta 5499349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 35594674 - 35594707
Alignment:
Q  125 tgtgtttactatatgagatcataatctttgtatc 158  Q
    ||||||||||||||||||| ||||||||||||||    
T  35594674 tgtgtttactatatgagattataatctttgtatc 35594707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 37529026 - 37528988
Alignment:
Q  9 atgaacaaaagactcagttaaaatgggacggagggagta 47  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  37529026 atgaacaaatgactcagttaaattgggacggagggagta 37528988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 36748310 - 36748342
Alignment:
Q  19 gactcagttaaaatgggacggagggagtagtta 51  Q
    |||||||||||| ||||||||||||||||||||    
T  36748310 gactcagttaaactgggacggagggagtagtta 36748342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 25983589 - 25983551
Alignment:
Q  9 atgaacaaaagactcagttaaaatgggacggagggagta 47  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  25983589 atgaacaaaagactcagttaaaatgagacggagagagta 25983551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 35622709 - 35622671
Alignment:
Q  9 atgaacaaaagactcagttaaaatgggacggagggagta 47  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  35622709 atgaacaaaagacttagttaaaatggaacggagggagta 35622671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 24131351 - 24131318
Alignment:
Q  14 caaaagactcagttaaaatgggacggagggagta 47  Q
    |||| |||||||||||||||||||||||||||||    
T  24131351 caaatgactcagttaaaatgggacggagggagta 24131318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 37264464 - 37264508
Alignment:
Q  9 atgaacaaaagactcagttaaaatgggacggagggagtagttaac 53  Q
    |||| |||||| |||| |||||||||||||||||||||| |||||    
T  37264464 atgagcaaaaggctcacttaaaatgggacggagggagtaattaac 37264508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University