View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20259_low_5 (Length: 346)
Name: NF20259_low_5
Description: NF20259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20259_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 14121364 - 14121048
Alignment:
| Q |
17 |
acatcagttgaaggatttgggcgccatgcattattaacagtggtgctaataaagacacgagatacaggcctgtttgggtcaagaggcgccccagcattat |
116 |
Q |
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| T |
14121364 |
acatcagttgaaggatttgggcgccatgcattattaacagtggtgctaataaagacatgagctacaggcctgttggggtcaagaggcgccccagcattat |
14121265 |
T |
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| Q |
117 |
ggacaaagtcgtaaagatcatagtaagtgttgttgggagtgtttccttgagctggtgcttgaaacccgtttgctaagatctcctggtaaggcctcgtggt |
216 |
Q |
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| T |
14121264 |
ggacaaagtcgtcaagattatagtaagtgttgttgggagtgtttccttgagctggtgcttggaacccgtttgctaagatctcctggtaaggcctcgtggt |
14121165 |
T |
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| Q |
217 |
ccatcgatacactggacggcggatatcaaactcaaagtcgtcaactctgtacacaagctcatcccccaagatcggtctgttaacgcgctcaagagtgttc |
316 |
Q |
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| T |
14121164 |
ccatcgatacactggacgccggatatcaaattcaaagtcgtccactctgcccgcaacctcatgccccaagatcggtcggttaacgcggtcaagattgctc |
14121065 |
T |
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| Q |
317 |
acaagacgttgggcttc |
333 |
Q |
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| T |
14121064 |
gccagacgttgggcttc |
14121048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 14113937 - 14113651
Alignment:
| Q |
17 |
acatcagttgaaggatttgggcgccatgcattattaacagtggtgctaataaagacacgagatacaggcctgtttgggtcaagaggcgccccagcattat |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||| ||||| || ||| |
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| T |
14113937 |
acatcagttgaaggatttggacgccatgcattattaatagtggtgctaataaaggcacgaggtacagctctgttggggtcaacaggcaccccaacactat |
14113838 |
T |
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| Q |
117 |
ggacaaagtcgtaaagatcatagtaagtgttgttgggagtgtttccttgagctggtgcttgaaacccgtttgctaagatctcctggtaaggcctcgtggt |
216 |
Q |
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| T |
14113837 |
ggacaaagccgtcaagatcatggtaaatgttgttgtcagcgtttccttgatctggtgcttggaacccgtttgtgaagatctcctggtaaggcttcctgct |
14113738 |
T |
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| Q |
217 |
ccatcgatacactggacggcggatatcaaactcaaagtcgtcaactctgtacacaagctcatcccccaagatcggtctgttaacgcg |
303 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||| |||||| ||||||||||||| |
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| T |
14113737 |
ccatcgatacattggacggcggatatcaaactcaaagtcgtccactctgtccacaacctcatgccctaagatctgtctgttaacgcg |
14113651 |
T |
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