View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20259_low_9 (Length: 212)
Name: NF20259_low_9
Description: NF20259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20259_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 27313763 - 27313941
Alignment:
| Q |
16 |
atgaaaatgcatgttgaggaataggtggagttatatttgaagcnnnnnnngtatatgatcaattaagatgaaacattagataaaaggcgattgaaaccta |
115 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
27313763 |
atgaaaatgtatgttgagggataggtggagttatatttgaagcaaaaaaagtatatgatcaattaagatgaaacattagatgaaaagcgattgaaaccta |
27313862 |
T |
|
| Q |
116 |
atccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatatatt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27313863 |
atccatgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtttattaggttttatatatatatt |
27313941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 11828017 - 11827948
Alignment:
| Q |
121 |
tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatata |
190 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11828017 |
tgttagataataaagtaatgggctatgctattaggcctattagtttagagtcaattaggttttatatata |
11827948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 31611539 - 31611487
Alignment:
| Q |
66 |
gtatatgatcaattaagatgaaacattagataaaaggcgattgaaacctaatc |
118 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||| | |||||||||||||| |
|
|
| T |
31611539 |
gtatatgatcgattaagatgaaacatttgatgaaaaactattgaaacctaatc |
31611487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 43516134 - 43516204
Alignment:
| Q |
121 |
tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatat |
191 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| | ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
43516134 |
tgtttgataataaaataatgggctatgctattggtcctgttagtttagagtccattaggttttatatatat |
43516204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 11222684 - 11222642
Alignment:
| Q |
16 |
atgaaaatgcatgttgaggaataggtggagttatatttgaagc |
58 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
11222684 |
atgaagatgtatgttgaggaataggtgaagttatatttgaagc |
11222642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 30435617 - 30435687
Alignment:
| Q |
121 |
tgttcgataataaagtaatgggctatgctaacgagcctattagtttagagtctattaggttttatatatat |
191 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| | |||| | ||||||||| |||||||||||||||||| |
|
|
| T |
30435617 |
tgttagataataaagtaatgagctatgctattgggcctgtcggtttagagttcattaggttttatatatat |
30435687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University