View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2025_high_6 (Length: 228)
Name: NF2025_high_6
Description: NF2025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2025_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 11672642 - 11672504
Alignment:
| Q |
30 |
cgagtttcaaagttgttatcaaatggctaatctctcattcttgctgcctgttttagctctttcacttttagctgtctgtgcagctgatgctacgactctc |
129 |
Q |
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||||||| |||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||| |
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| T |
11672642 |
cgagttttaaagttcttatcaaatggctaatctctcactcatgctgcctcttttagctctttcacttctagctgtctttgcagctgatgctactactctc |
11672543 |
T |
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| Q |
130 |
caagatttttgcgtggcaaacccaataggccaaggtata |
168 |
Q |
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| T |
11672542 |
caagatttttgcgtgacaaatccaataggccaaggtata |
11672504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 11720826 - 11720688
Alignment:
| Q |
33 |
gtttcaaagttgttatcaaatggctaatctctcattcttgctgcctgttttagctctttcacttttagctgtctgtgcagctga---tgctacgactctc |
129 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||| |||||| |
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| T |
11720826 |
gtttcaaagttttattcaaatggctaatctctcattcttgctgcctgttttagctctttcacttttagctgtctttgctgttgatgctgctactactctc |
11720727 |
T |
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| Q |
130 |
caagatttttgcgtggcaaacccaataggccaaggtata |
168 |
Q |
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| T |
11720726 |
caagatttttgcgtgacaaatccaataggccaaggtata |
11720688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 11712246 - 11712371
Alignment:
| Q |
14 |
attattctagggctcgcgagtttcaaagttgttatcaaatggctaatctctcattcttgctgcctgttttagctctttcacttttagctgtctgtgcagc |
113 |
Q |
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| T |
11712246 |
attattctagggcttgcaagtttcaaagttcttatcaaatggctaatccctcattcttgctgtctgttttagctctttcaattttagttgtctttgcagc |
11712345 |
T |
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| Q |
114 |
tgatgctacgactctccaagattttt |
139 |
Q |
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|||||| || |||||||||||||||| |
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| T |
11712346 |
tgatgccactactctccaagattttt |
11712371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 11729947 - 11729870
Alignment:
| Q |
100 |
gctgtctgtgcagctgatgctacgactctccaagatttttgcgtggcaaacccaataggccaaggtataattaacaaa |
177 |
Q |
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| T |
11729947 |
gctgtctttgcagatgatgctactactctccaagatttttgcgtcacaaacccaataggccaaggtataattaacaaa |
11729870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 11729989 - 11729944
Alignment:
| Q |
30 |
cgagtttcaaagttgttatcaaatggctaatctctcattcttgctg |
75 |
Q |
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| T |
11729989 |
cgagtttcaaagttgttatcaaatggctaatctctcattcttgctg |
11729944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 7662594 - 7662482
Alignment:
| Q |
32 |
agtttcaaagttgttatcaaatggctaatctctcattcttgctgcctgttttagctctttcacttttagctgtctgtgcagctgatgctacgactctcca |
131 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
7662594 |
agtttcaaagtttttatcaaatggctaatctctcatacttgccccctgttttagctctttcacttttagttgtctttgcagctgatgctagtactctcca |
7662495 |
T |
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| Q |
132 |
agatttttgcgtg |
144 |
Q |
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||||| ||||||| |
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| T |
7662494 |
agattattgcgtg |
7662482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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