View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2025_low_1 (Length: 987)

Name: NF2025_low_1
Description: NF2025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2025_low_1
NF2025_low_1
[»] chr6 (7 HSPs)
chr6 (18-476)||(34932643-34933104)
chr6 (610-740)||(34932418-34932541)
chr6 (725-926)||(34932262-34932463)
chr6 (529-570)||(34932538-34932579)
chr6 (541-578)||(34119028-34119065)
chr6 (541-578)||(34146187-34146224)
chr6 (541-578)||(34158803-34158840)
[»] chr4 (4 HSPs)
chr4 (543-580)||(38648661-38648698)
chr4 (340-414)||(38648614-38648688)
chr4 (19-60)||(38649189-38649230)
chr4 (547-580)||(48430881-48430914)
[»] chr3 (1 HSPs)
chr3 (541-574)||(52805612-52805645)


Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 34933104 - 34932643
Alignment:
Q  18 tgatttgggggttagggtttaaaccttatgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgtttaattaattagt 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34933104 tgatttgggggttagggtttaaaccttgtgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgtttaattaattagt 34933005  T
Q  118 acatatcatcatcatc---taattaccatctaacaattctgttctttcatattatctgcgaagccgactctctcccaaatcttcaacatctatagcgcaa 214  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34933004 acatatcatcatcatcatctaattaccatctaacaattttgttctttcatattatctgcgaagccgactctctcccaaatcttcaacatctatagtgcaa 34932905  T
Q  215 agatgagatactcagcgggatgcccatcgagatacgcacacggaataactcctgcgcacatgttcgacaacattcctgtgtttaaagccgaggcaagctt 314  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34932904 agatgagatactcagcgggatgcccatcgagatacacacacggaataactcctgcgcacatgttcgacaaccttcctgtgtttaaagccgaggcaagctt 34932805  T
Q  315 ttctggggcctgtagcaaatgctttcttttaattctagtttcactattttagtttctttgtgcgtattctagttctttaatattacttactctttaaacc 414  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34932804 ttctggggcctgtagcaaatgctttcttttgattctagtttcacaattttagattctttgtgcgtattctagttctttaatattacttactctttaaacc 34932705  T
Q  415 cacaggatcccgaactggtatcgcttcagcaatggcttgatgaaatagaaagtgagaagaat 476  Q
    ||||||||| |||||||| |||||||||| ||  ||||||| |||||||| |||||||||||    
T  34932704 cacaggatctcgaactggcatcgcttcagaaaatgcttgataaaatagaatgtgagaagaat 34932643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 610 - 740
Target Start/End: Complemental strand, 34932541 - 34932418
Alignment:
Q  610 ttaatctctaaacaagcagaggcgttttgaggcgagtgttcgtgcttgcattgacagaattctacaggagaaagctgatgctaaagttccaaaggagaca 709  Q
    ||||||||||||  |||||||||||||| ||||||||||| ||||||||||   ||    ||||||||||||||||||||||||||||||||||||||||    
T  34932541 ttaatctctaaatcagcagaggcgtttttaggcgagtgtttgtgcttgcat---ca----tctacaggagaaagctgatgctaaagttccaaaggagaca 34932449  T
Q  710 gccaagacaattgctgttcgaaagcagacag 740  Q
    |||||| ||| |||| ||| |||| ||||||    
T  34932448 gccaaggcaactgctcttcaaaagaagacag 34932418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 725 - 926
Target Start/End: Complemental strand, 34932463 - 34932262
Alignment:
Q  725 gttcgaaagcagacagccaagacaactgctgttcgaaagaagacagccaagagaactaaagttacaaggcagcagggaaagaaagcggcgaaggcttgaa 824  Q
    |||| |||| ||||||||||| |||||||| ||| ||||||||||| ||| |   |||||||| |||||       ||||||||| || | || ||||||    
T  34932463 gttccaaaggagacagccaaggcaactgctcttcaaaagaagacaggcaaaaaggctaaagttccaagg-------gaaagaaagtggtggagacttgaa 34932371  T
Q  825 ttgaaaggacatccgaaatgtgaccactcagttgatgagtag-------acacgctctattctttcctttatctgttttagatgtcctgctgtttgataa 917  Q
    ||  |||||| |||| ||||||| ||||| |||||||||||        |||| |||||||||||||||||||||||| ||||||||  ||| |||||||    
T  34932370 tttcaaggacgtccggaatgtgatcactctgttgatgagtattgtgtacacacactctattctttcctttatctgtttaagatgtcccactgcttgataa 34932271  T
Q  918 aagcaagac 926  Q
    |||||||||    
T  34932270 aagcaagac 34932262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 570
Target Start/End: Complemental strand, 34932579 - 34932538
Alignment:
Q  529 attgttatgggccctttagcaatgcttttgattcaagtttaa 570  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  34932579 attgttatgggctctttagcaatgcttttgattcaaatttaa 34932538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 541 - 578
Target Start/End: Original strand, 34119028 - 34119065
Alignment:
Q  541 cctttagcaatgcttttgattcaagtttaacaatttta 578  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  34119028 cctttagcaatgattttgattcaagtttcacaatttta 34119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 541 - 578
Target Start/End: Original strand, 34146187 - 34146224
Alignment:
Q  541 cctttagcaatgcttttgattcaagtttaacaatttta 578  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  34146187 cctttagcaatgattttgattcaagtttcacaatttta 34146224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 541 - 578
Target Start/End: Original strand, 34158803 - 34158840
Alignment:
Q  541 cctttagcaatgcttttgattcaagtttaacaatttta 578  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  34158803 cctttagcaatgattttgattcaagtttcacaatttta 34158840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 580
Target Start/End: Complemental strand, 38648698 - 38648661
Alignment:
Q  543 tttagcaatgcttttgattcaagtttaacaattttagt 580  Q
    |||||||||||||||||||||||||| |||||||||||    
T  38648698 tttagcaatgcttttgattcaagtttcacaattttagt 38648661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 38648688 - 38648614
Alignment:
Q  340 cttttaattctagtttcactattttagtttctttgtgcgtattctagttctttaatattacttactctttaaacc 414  Q
    ||||| |||| |||||||| |||||||||||||||| | ||||  | ||||||||||||| ||| ||| ||||||    
T  38648688 cttttgattcaagtttcacaattttagtttctttgttcatatttgaattctttaatattaattaatctataaacc 38648614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 38649230 - 38649189
Alignment:
Q  19 gatttgggggttagggtttaaaccttatgaattcgggatttt 60  Q
    |||||||||| ||||||||||||| |||||||| ||||||||    
T  38649230 gatttgggggctagggtttaaaccgtatgaattggggatttt 38649189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 547 - 580
Target Start/End: Complemental strand, 48430914 - 48430881
Alignment:
Q  547 gcaatgcttttgattcaagtttaacaattttagt 580  Q
    |||||||||||||||||||||| |||||||||||    
T  48430914 gcaatgcttttgattcaagtttcacaattttagt 48430881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 541 - 574
Target Start/End: Complemental strand, 52805645 - 52805612
Alignment:
Q  541 cctttagcaatgcttttgattcaagtttaacaat 574  Q
    |||||||||||||||||||||||||||| |||||    
T  52805645 cctttagcaatgcttttgattcaagttttacaat 52805612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University