View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2025_low_11 (Length: 227)
Name: NF2025_low_11
Description: NF2025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2025_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 11788552 - 11788751
Alignment:
| Q |
17 |
agcaatttacggtatatataagatataaaagttagttatactgacaagttagttacaccagtttttcattatcaatataatttgcattttactttcgtct |
116 |
Q |
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| T |
11788552 |
agcaatttacggtatatataagatataaaagttagttatactgacaagttagttacaccagtttttcattatcaatataatttgcattttactttcgtct |
11788651 |
T |
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| Q |
117 |
tatcaatagcttttgtcaaga----aataatatggtatcatatagccaggttacaaccaagtgattatatataagcgattcctatcaaaaaagataaaat |
212 |
Q |
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| T |
11788652 |
tatcagtaacttttctcaagaatataataatatggtatcatacagcccggttacaaccaagtgattatatataagcgattcctatcaaaaaagataaaat |
11788751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 11800719 - 11800918
Alignment:
| Q |
17 |
agcaatttacggtatatataagatataaaagttagttatactgacaagttagttacaccagtttttcattatcaatataatttgcattttactttcgtct |
116 |
Q |
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| T |
11800719 |
agcaatttacggtatatataagatataaaagttagttatactgacaagttagttacaccagtttttcattatcaatataatttgcattttactttcgtct |
11800818 |
T |
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| Q |
117 |
tatcaatagcttttgtcaaga----aataatatggtatcatatagccaggttacaaccaagtgattatatataagcgattcctatcaaaaaagataaaat |
212 |
Q |
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| T |
11800819 |
tatcagtaacttttctcaagaatataataatatggtatcatacagcccggttacaaccaagtgattatatataagcgattcctatcaaaaaagataaaat |
11800918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 11784788 - 11784882
Alignment:
| Q |
80 |
tttcattatcaatataatttgcattttactttcgtcttatcaatagcttttgtcaaga----aataatatggtatcatatagccaggttacaaccaa |
172 |
Q |
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| T |
11784788 |
tttcattatcaatataatttgcattttattttcctcttatcaatagcttttgccaagaatataataatatggtatc--atagccaggttacaaccaa |
11784882 |
T |
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