View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2025_low_3 (Length: 404)
Name: NF2025_low_3
Description: NF2025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2025_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 40754112 - 40754498
Alignment:
| Q |
17 |
ttttatcggtagttgtcccaaccaactttttgagacccgagtctggagtagtagcaatttctggggagtttgaaccccttctttcaatactgttgtctaa |
116 |
Q |
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| T |
40754112 |
ttttatctgtagttgtcccaaccaactttttgagacccgagtccggagtagtagcaatttctggggagtttgaaccccttctttcaatactgttgtctaa |
40754211 |
T |
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| Q |
117 |
tgttatgcactcctccttgnnnnnnnaattttggacaagagttatgttctcgtaacttctccacct----taaaattttagtcattgtaaattggctttt |
212 |
Q |
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| T |
40754212 |
tgttatgcactcctccttgtttttttaattttggacaagagttatgttctcataacttctccaccttaaataaaattctagtcattgtaaattggctttt |
40754311 |
T |
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| Q |
213 |
gtcatagggcaatgtagctccaaagtaagtttctaattcgacatattttagacactacattagctactc-----------gtgtctgcgtttgatcaaga |
301 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
40754312 |
gtcatagggcaatgtagctccaaagtaagtttttaattcgacatattttagacactacattagcaactcattgatattcggtgtctgcgtttgatcaaga |
40754411 |
T |
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| Q |
302 |
caacatatgttgtcttttcacgaactacaacattaaattatcactaaaatatacataataacccgagatagattcaagtgtatgaaa |
388 |
Q |
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||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40754412 |
caacacatgttgtctttttacgaactacgacattaaattatcactaaaatatacataataacccgagatagattcaagtgtatgaaa |
40754498 |
T |
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