View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2025_low_4 (Length: 318)
Name: NF2025_low_4
Description: NF2025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2025_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 2510637 - 2510384
Alignment:
| Q |
13 |
aatataagtgcaatttaagacatgagaacatataaagagataggcaaatgcaaaaatttgaaaatagagtctgggatttatccataaccttccttcatga |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2510637 |
aatataagtacaatttaagacatgagaacatataaagagataggcaaatgcaaaaatttgaaaatagagtctcggatttatccataaccttccttcatga |
2510538 |
T |
|
| Q |
113 |
atattattattttcattctttgcacaaatatgcatcttgtattttacaccattgttttccatgtcatatagttgacgacaaccatccaagagacactctc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2510537 |
atattattattttcattctttgcacaaatatgcatcttgtattttacaccattgttttccatgtcatatagttgacgacaaccatccaagagacactctc |
2510438 |
T |
|
| Q |
213 |
acatacatttaatgaagtggaaagatttgttgacattttttggacaattgttgt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2510437 |
acatacatttaatgaagtggaaagatttgttgacattttttggacaattgttgt |
2510384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 2510370 - 2510332
Alignment:
| Q |
263 |
ttgtcaaatttctttttcaattgtcaacaatattgaatg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2510370 |
ttgtcaaatttctttttcaattgtcaacaatattgaatg |
2510332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University