View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2025_low_5 (Length: 275)
Name: NF2025_low_5
Description: NF2025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2025_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 8896682 - 8896928
Alignment:
| Q |
11 |
gaacctgtgcaacaaatcagagcattgagatctgtagtcagacatgatataggagttcccaaactaatcgaatcaaggatacacatctacagcaaatttc |
110 |
Q |
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| T |
8896682 |
gaacctgtgcaacaaatcagagcattgagatctgtagtcagacatgatataggagtttccaaactaattgaatcatagatacacatctacagcaaatttc |
8896781 |
T |
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| Q |
111 |
taaagaagctataccactagtcgtagtacctttttctcgaagcatctctcttttcgctttaatcgaaactttgttagagctgcttctctttgactggagc |
210 |
Q |
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| T |
8896782 |
taaagaagctataccactagtcatagtacctttttctcgaagcatctctcttttcgctttaatcgaaactttgttagagctgcttctctttgacgagagc |
8896881 |
T |
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| Q |
211 |
gatgagaatcactcaatctaaattcatcatcgtcatcatcacaatca |
257 |
Q |
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| T |
8896882 |
gatgagaatcactcaatctaaattcataatcgtcatcatcacaatca |
8896928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 49085348 - 49085265
Alignment:
| Q |
135 |
agtacctttttctcgaagcatctctcttttcgctttaatcgaaactttgttagagctgcttctctttgactggagcgatgagaa |
218 |
Q |
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| T |
49085348 |
agtacctttttgtcatagcatctgtcttttcgcttcagtcgaaactttgttagagctgcttctctttggctagtgcgatgagaa |
49085265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 31553537 - 31553496
Alignment:
| Q |
234 |
tcatcatcgtcatcatcacaatcaatacataaacatttcaac |
275 |
Q |
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| T |
31553537 |
tcatcatcgtcatcatcgcaatcaatacataaacatttcaac |
31553496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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