View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20260_high_4 (Length: 396)
Name: NF20260_high_4
Description: NF20260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20260_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 30410702 - 30411076
Alignment:
| Q |
18 |
atattggggaattacttgatcgatgatcttcaaccccagaacataattgcaatttgataaatttgagtaactaaattagccaaccactatacatataaaa |
117 |
Q |
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| T |
30410702 |
atattggggaattacttgatcgatgatcttcaaccccagaacataattgcaatttgataaatttgagtaactaaattagccaaccactatacatataaaa |
30410801 |
T |
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| Q |
118 |
atcaagtattgaaaagagagnnnnnnnn---------ttgttcgatcatcaaaattataagagtgaaacaatttaatatctattattaagaaatgacaaa |
208 |
Q |
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| T |
30410802 |
atcaagtattgaaaagagaaaaaaaaaaaaaaaaaaattgttcgatcatcaaaattataagagtgaaacaatttaatatctattattacgaaatgacaaa |
30410901 |
T |
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| Q |
209 |
atagtcactaaaattgaagatcctcaatcagtttactcaaatcaactcggataaatttagatagtaaaatgagatcaatggaatttgtagaaacaaatat |
308 |
Q |
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| T |
30410902 |
atagtcactaaaattgaagattgtcaatcagtttactcaaatcaactcggataaatttagatagcaaaatgagatcaatggaatttttagaaacaaatat |
30411001 |
T |
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| Q |
309 |
cacacctcaacgtgaccaaaacaacgagccaactctgcatatattgttaaatgacatagagaatgcactaattga |
383 |
Q |
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| T |
30411002 |
cacagctcaacgtgaccaaaacaacgagtcaactctgcatatattgttaaatgacatagagaatgcaccaattga |
30411076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 308
Target Start/End: Original strand, 30398545 - 30398683
Alignment:
| Q |
171 |
gtgaaacaatttaatatctattattaagaaatgacaaaatagtcactaaaattgaagatcctcaatcagtttactcaaatcaactcggataaatttagat |
270 |
Q |
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| T |
30398545 |
gtgagacaatttgatatctatagttacaaaatgacaaattagtcgctaaaattgaagatcgtcaatcagcttagttgagtcaacttcggtaaatttaaat |
30398644 |
T |
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| Q |
271 |
agtaaaat-gagatcaatggaatttgtagaaacaaatat |
308 |
Q |
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| T |
30398645 |
agcaaaatagagatcaatgcaatttcttgaaacatatat |
30398683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 30398434 - 30398504
Alignment:
| Q |
64 |
ttgcaatttgataaatttgagtaactaaattagccaaccactatacatataaaaatcaagtattgaaaaga |
134 |
Q |
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| T |
30398434 |
ttgcaatttcataaatttgaaaaactaaattagccgaccaatacgcacataaaaatcaaatattgaaaaga |
30398504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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