View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20260_low_1 (Length: 774)
Name: NF20260_low_1
Description: NF20260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20260_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 613; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 19 - 765
Target Start/End: Complemental strand, 12580511 - 12579763
Alignment:
| Q |
19 |
agacaacatcaatgttagtattaatcaataatttttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttcatt |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12580511 |
agacaacatcaacgttagtattaatcaataatttttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttcatt |
12580412 |
T |
|
| Q |
119 |
cttatttgtaggttgacctctttcaaggatcaatttgctttctttcaagagttggttcatcaatggaatttgcaataggtttgagtaaattggttgttat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12580411 |
cttatttgtaggttgacctctttcaaggatcaatttgctatctttcaagagttggttcatcaatggaatttgcaataggtttgagtaaattggttgttct |
12580312 |
T |
|
| Q |
219 |
aagatttggttcactatcactagttgctgagagcatgaaatattccatcacctccatgatgttatcttccaatgattgttcattcattatgggtatgaga |
318 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12580311 |
aagagttggttcattatcactagttgctgagagcatgaaatcttccatcacctccatgatgttatcttccaatgattgttcattcattatgggtatgaga |
12580212 |
T |
|
| Q |
319 |
ctaagcattagaaggctgcaatctttgacaagaaaatatgacggaattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcata |
418 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12580211 |
ctaagcattagaagactataatctttgacaagaaaatatgatggaattgaacatgaggccttcctttttacttggttgtcaatttttgtttttcctcata |
12580112 |
T |
|
| Q |
419 |
aaaaatggtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12580111 |
aaaaatggtgacaagttgtttgttttctgttggtgttaatcttgctagaagaaatccaatttctttggtggcaattgttttggctagcataaataaggat |
12580012 |
T |
|
| Q |
519 |
ttaactttatttaag--nnnnnnntctgtcaaaatatcttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaa |
616 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
12580011 |
ttaacattatttaagaaaaaaaaatctgtcaaaatatcttgttggtgatgatatatatcctgtttaatttactcttccatcacctttttacttggcttaa |
12579912 |
T |
|
| Q |
617 |
gtttggatacgggagaggttcacaaactatcaaccacacccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgca |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12579911 |
gtttggatacgggagaggttcacaaactatcaaccacacccatattgatcaaccgcatagaccctttattgcttaggttgaataaggttcaggccttgca |
12579812 |
T |
|
| Q |
717 |
aattgacaatgttcagtttgcattagactcaagtgtcaatgatattctt |
765 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
12579811 |
aattgacaatgttaagtttgcattagactcaagtgttaatgattttctt |
12579763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 19 - 765
Target Start/End: Complemental strand, 12520222 - 12519468
Alignment:
| Q |
19 |
agacaacatcaatgttagtattaatcaataatttttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttcatt |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12520222 |
agacaacatcaacgttagtattaatcaataatttttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttcatt |
12520123 |
T |
|
| Q |
119 |
cttatttgtaggttgacctctttcaaggatcaatttgctttctttcaagagttggttcatcaatggaatttgcaataggtttgagtaaattggttgttat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12520122 |
cttatttgtaggttgacctctttcaaggatcaatttgctatctttcaagagttggttcatcaatggaatttgcaataggtttgagtaaattggttgttct |
12520023 |
T |
|
| Q |
219 |
aagatttggttcactatcactagttgctgagagcatgaaatattccatcacctccatgatgttatcttccaatgattgttcattcattatgggtatgaga |
318 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
12520022 |
aagatttggttcactatcactggttgttgagagcatgaaatcttccatcacctccatgatgttatcttctaatgattgttttttcattatgggtatgaga |
12519923 |
T |
|
| Q |
319 |
ctaagcattagaaggctgcaatctttgacaagaaaatatgacggaattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcata |
418 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12519922 |
ctaagcattagaagactataatctttgacaagaaaatatgatggaattgaacatgaagccttccttttaacttggttgtcaatttttgtttttcctcata |
12519823 |
T |
|
| Q |
419 |
aaaaatggtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggat |
518 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12519822 |
aaaaatggtgacaaattgtttgttttctgttggtgttaatcttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggac |
12519723 |
T |
|
| Q |
519 |
ttaactttatttaagnnnnnnntctgtcaaaatatcttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagt |
618 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||| ||||||||||| || |||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
12519722 |
ttaactttatttaagaaaaaaatctgtcaaaatatcttgtaggtaatgatatatattctgtttaatttactcttctatcacctttttatttgggttaagt |
12519623 |
T |
|
| Q |
619 |
ttggatacgggagaggttcacaaactatcaaccacacccatgttgatcaacc---------acatagaccctttattacttaggttgaataaggttcagg |
709 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
12519622 |
ttggatacgggagaggtt-acaaactatcaaccacacccatgttgatcacccatggtaatgatatagactctttattgcttaggttgaataaggttcagg |
12519524 |
T |
|
| Q |
710 |
ccttgcaaattgacaatgttcagtttgcattagactcaagtgtcaatgatattctt |
765 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12519523 |
ccttgcaaattgacaatgttaagtttgcattagactcaagtgtcaatgattttctt |
12519468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 12496357 - 12495970
Alignment:
| Q |
19 |
agacaacatcaatgttagtattaatcaataatttttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttcatt |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12496357 |
agacaacatcaacgttagtattaatcaataatttttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttcatt |
12496258 |
T |
|
| Q |
119 |
cttatttgtaggttgacctctttcaaggatcaatttgctttctttcaagagttggttcatcaatggaatttgcaataggtttgagtaaattggttgttat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12496257 |
cttatttgtaggttgacctctttcaaggatcaatttgctttcttttaagagttggttcatcaatgaaatttgcaataggtttgagtaaattggttgttat |
12496158 |
T |
|
| Q |
219 |
aagatttggttcactatcactagttgctgagagcatgaaatattccatcacctccatgatgttatcttccaatgattgttcattcattatgggtatgaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12496157 |
aagatttggttcactatcactagttgctgagagcatgaaatattccatcacctccatgatgttatcttccaatgattgttcattcattatgggtatgaga |
12496058 |
T |
|
| Q |
319 |
ctaagcattagaaggctgcaatctttgacaagaaaatatgacggaattgaagatgaagccttcctttttacttggttgtcaatttttg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12496057 |
ctaagcattagaaggctgcaatctttgacaagaaaatatgacggaattgaagatgaagccttcctttttacttggttgtcaatctttg |
12495970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 765
Target Start/End: Original strand, 12496895 - 12497651
Alignment:
| Q |
17 |
agagacaacatcaatgttagtattaatcaataatttttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttca |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
12496895 |
agagacaacatcaatgttagtatcaatcaataattttacaatttcattacctttatcgttgaacatatccatccataatgatgtgtaattgtgaccttca |
12496994 |
T |
|
| Q |
117 |
ttcttatttgtaggttgacctctttcaaggatcaatttgctttctttcaagagttggttcatcaatggaatttgcaataggtttgagtaaattggttgtt |
216 |
Q |
| |
|
||| |||||||| |||| ||||| |||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12496995 |
ttcctatttgtaagttgctttctttgaaggatcagtttgctttcttttaagaattgtttcatcaatggaatttgcaataggtttgagtaaatgggttgtt |
12497094 |
T |
|
| Q |
217 |
ataagatttggttcactatcactagttgctgagagcatgaaatattccatcacctccatgatgttatcttccaatgattgttcattcattatgggtatga |
316 |
Q |
| |
|
||||| ||||||||||||||| | | ||| |||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
12497095 |
ttaagagttggttcactatcaccaacagttgaaagcatgcaatattccttcacctccatgatgttatcttccaatgcttgtttattcatcatgggtatga |
12497194 |
T |
|
| Q |
317 |
gactaagcattagaaggctgcaatctttgacaagaaaatatgacggaattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctca |
416 |
Q |
| |
|
|| || |||| | |||||| |||||||||| ||||| |||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
12497195 |
gattatgcatgaaaaggctataatctttgacgagaaaccatgatggaattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctca |
12497294 |
T |
|
| Q |
417 |
ta-aaaaatggtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataag |
515 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||| ||| | ||||||||||||||||||||| |||| ||||| | ||| ||||||||||||||||||||| |
|
|
| T |
12497295 |
tagaaaaatggtgataagttatttgttttctattgctattaatcttgctagaagaaatcaaattactttgccgccagctgttttggctagcataaataac |
12497394 |
T |
|
| Q |
516 |
gatttaactttatttaag-------nnnnnnntctgtcaaaatatcttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatt |
608 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||||||| |||||| | || || |||||||| || | ||||||||||| | |
|
|
| T |
12497395 |
gatttaactttatttaagaaaacaattattgatctgtcaaaacatcttattggtgataatatattttctgttgaatttacttttctctcacctttttact |
12497494 |
T |
|
| Q |
609 |
tggcttaagtttggatacgggagaggttcacaaactatcaaccac-acccatgttgatcaaccacatagaccctttattacttaggttgaataaggttca |
707 |
Q |
| |
|
||| | | |||||| | |||||||| || |||||| ||||||| || ||||||||||||||||||||| | |||||| | |||| | ||||||||| |
|
|
| T |
12497495 |
tggttcatgtttgggt-tgggagaggctcgcaaacttgcaaccacaactcatgttgatcaaccacatagaacatttattgttgaggtggcataaggttct |
12497593 |
T |
|
| Q |
708 |
ggccttgcaaattgacaatgttcagtttgcattagactcaagtgtcaatgatattctt |
765 |
Q |
| |
|
||||||| |||||| ||||||| ||| |||||||| ||||| |||||||||| ||||| |
|
|
| T |
12497594 |
ggccttgaaaattggcaatgttaagtgtgcattaggctcaactgtcaatgattttctt |
12497651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 765
Target Start/End: Original strand, 12520760 - 12521516
Alignment:
| Q |
17 |
agagacaacatcaatgttagtattaatcaataatttttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttca |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
12520760 |
agagacaacatcaatgttagtatcaatcaataattttacaatttcattacctttatcgttgaacatatccatccataatgatgtgtaattgtgaccttca |
12520859 |
T |
|
| Q |
117 |
ttcttatttgtaggttgacctctttcaaggatcaatttgctttctttcaagagttggttcatcaatggaatttgcaataggtttgagtaaattggttgtt |
216 |
Q |
| |
|
||| |||||||| |||| ||||| |||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12520860 |
ttcctatttgtaagttgctttctttgaaggatcagtttgctttcttttaagaattgtttcatcaatggaatttgcaataggtttgagtaaatgggttgtt |
12520959 |
T |
|
| Q |
217 |
ataagatttggttcactatcactagttgctgagagcatgaaatattccatcacctccatgatgttatcttccaatgattgttcattcattatgggtatga |
316 |
Q |
| |
|
||||| ||||||||||||||| | | ||| |||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
12520960 |
ttaagagttggttcactatcaccaacagttgaaagcatgcaatattccttcacctccatgatgttatcttccaatgcttgtttattcatcatgggtatga |
12521059 |
T |
|
| Q |
317 |
gactaagcattagaaggctgcaatctttgacaagaaaatatgacggaattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctca |
416 |
Q |
| |
|
|| || |||| | |||||| |||||||||| ||||| |||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
12521060 |
gattatgcatgaaaaggctataatctttgacgagaaaccatgatggaattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctca |
12521159 |
T |
|
| Q |
417 |
ta-aaaaatggtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataag |
515 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||| ||| | ||||||||||||||||||||| |||| ||||| | ||| ||||||||||||||||||||| |
|
|
| T |
12521160 |
tagaaaaatggtgataagttatttgttttctattgctattaatcttgctagaagaaatcaaattactttgccgccagctgttttggctagcataaataac |
12521259 |
T |
|
| Q |
516 |
gatttaactttatttaag-------nnnnnnntctgtcaaaatatcttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatt |
608 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||||||| |||||| | || || |||||||| || | ||||||||||| | |
|
|
| T |
12521260 |
gatttaactttatttaagaaaacaattattgatctgtcaaaacatcttattggtgataatatattttctgttgaatttacttttctctcacctttttact |
12521359 |
T |
|
| Q |
609 |
tggcttaagtttggatacgggagaggttcacaaactatcaaccac-acccatgttgatcaaccacatagaccctttattacttaggttgaataaggttca |
707 |
Q |
| |
|
||| | | |||||| | |||||||| || |||||| ||||||| || ||||||||||||||||||||| | |||||| | |||| | ||||||||| |
|
|
| T |
12521360 |
tggttcatgtttgggt-tgggagaggctcgcaaacttgcaaccacaactcatgttgatcaaccacatagaacatttattgttgaggtggcataaggttct |
12521458 |
T |
|
| Q |
708 |
ggccttgcaaattgacaatgttcagtttgcattagactcaagtgtcaatgatattctt |
765 |
Q |
| |
|
||||||| |||||| ||||||| ||| |||||||| ||||| |||||||||| ||||| |
|
|
| T |
12521459 |
ggccttgaaaattggcaatgttaagtgtgcattaggctcaactgtcaatgattttctt |
12521516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 533
Target Start/End: Original strand, 12581078 - 12581595
Alignment:
| Q |
17 |
agagacaacatcaatgttagtattaatcaataatttttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttca |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
12581078 |
agagacaacatcaatgttagtatcaatcaataatttcagaatttcattacctttatcgttgaacatatccatccataatgatgtgtaattgtgaccttca |
12581177 |
T |
|
| Q |
117 |
ttcttatttgtaggttgacctctttcaaggatcaatttgctttctttcaagagttggttcatcaatggaatttgcaataggtttgagtaaattggttgtt |
216 |
Q |
| |
|
||| |||||||| |||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
12581178 |
ttcctatttgtaagttgctttctttcaaggatcaatttgctttcttttaagaattgtttcatcaatggaatttgcaataggtttgagtaaatgggctgtt |
12581277 |
T |
|
| Q |
217 |
ataagatttggttcactatcactagttgctgagagcatgaaatattccatcacctccatgatgttatcttccaatgattgttcattcattatgggtatga |
316 |
Q |
| |
|
||||| ||||||||||||||| | | ||| |||||||||| |||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
12581278 |
ttaagagttggttcactatcaccaacagttgaaagcatgaaattttccttcacctccatgatgttatcttccaatgcttgtttattcatcatgggtatga |
12581377 |
T |
|
| Q |
317 |
gactaagcattagaaggctgcaatctttgacaagaaaatatgacggaattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctca |
416 |
Q |
| |
|
||||| |||| | |||||| ||||||||| ||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12581378 |
gactatgcatgaaaaggctataatctttgatgagaaaccatgatggaattgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctcg |
12581477 |
T |
|
| Q |
417 |
ta-aaaaatggtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataag |
515 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||| ||| | ||||||||||||||||||||| |||| ||||| | | |||||||||||||||||||||| |
|
|
| T |
12581478 |
tagaaaaatggtgaaaagttatttgttttctattgctattaatcttgctagaagaaatcgaattactttgccgcaaactgttttggctagcataaataag |
12581577 |
T |
|
| Q |
516 |
gatttaactttatttaag |
533 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12581578 |
gatttaactttatttaag |
12581595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 460 - 765
Target Start/End: Complemental strand, 12495972 - 12495667
Alignment:
| Q |
460 |
ttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaagnnnnnnntctgtcaaaatatcttgtt |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12495972 |
ttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaataaaaaaatctgtcaaaatatcttgtt |
12495873 |
T |
|
| Q |
560 |
ggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaaccacacccat |
659 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12495872 |
ggtgatgatatatatcctatttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaaccacacccat |
12495773 |
T |
|
| Q |
660 |
gttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactcaagtgtcaatgat |
759 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12495772 |
gttcatcaaccacatagaccctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactcaagtgtcaatgat |
12495673 |
T |
|
| Q |
760 |
attctt |
765 |
Q |
| |
|
||||| |
|
|
| T |
12495672 |
tttctt |
12495667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 654 - 765
Target Start/End: Original strand, 12581655 - 12581766
Alignment:
| Q |
654 |
acccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactcaagtgtc |
753 |
Q |
| |
|
|||||||||||||||||||||| | | | |||| | |||| | ||||||||| ||||||| ||||| ||||||| ||| |||||||| ||||| || | |
|
|
| T |
12581655 |
acccatgttgatcaaccacatataacatatattgttgaggtggcataaggttctggccttgaaaattagcaatgttaagtgtgcattaggctcaactgcc |
12581754 |
T |
|
| Q |
754 |
aatgatattctt |
765 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
12581755 |
aatgattttctt |
12581766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 6e-64; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 363 - 765
Target Start/End: Original strand, 20046155 - 20046566
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataaaaa-atggtgacaagttgtttgttttctgttgttgttaatctt |
461 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| ||| | |||||||| |
|
|
| T |
20046155 |
aattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaaaatatggtgaaaaattgtttgttttctattgctattaatctt |
20046254 |
T |
|
| Q |
462 |
gctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaag-------nnnnnnntctgtcaaaatatc |
554 |
Q |
| |
|
|||||| |||||||||||||||||| | | |||||||| ||||||| |||||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
20046255 |
gctagaggaaatccaattgctttggcacctgctgttttgggtagcatatataaggatttaagtttatttaagaacacaattattgatctgttaaaatatc |
20046354 |
T |
|
| Q |
555 |
ttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaaccac- |
653 |
Q |
| |
|
||||||| ||||| || |||| || |||||||| || ||||||| |||||||||| | |||||||| | ||||||||||| |||| | | ||||| |
|
|
| T |
20046355 |
cggttggtggtgatagatttcctgttgaatttactattctatcacccttttatttggttcaagtttgggtgtgggagaggttcgcaaaattaccaccaca |
20046454 |
T |
|
| Q |
654 |
acccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactcaagtgtc |
753 |
Q |
| |
|
||||||||||||||| | || ||||||||||| |||||| | |||||||||| || ||| ||||||| |||||| |||| ||||||||||||| |||| |
|
|
| T |
20046455 |
acccatgttgatcaatcccagcgaccctttattgtttaggtggcataaggttcacgcattgaaaattgataatgttaagttggcattagactcaactgtc |
20046554 |
T |
|
| Q |
754 |
aatgatattctt |
765 |
Q |
| |
|
||||| ||||| |
|
|
| T |
20046555 |
gatgattttctt |
20046566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 363 - 533
Target Start/End: Original strand, 26647036 - 26647207
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcat-aaaaaatggtgacaagttgtttgttttctgttgttgttaatctt |
461 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||| ||| ||||||||||||| ||| |||||| ||||||||||||| || ||| |||| ||||| |
|
|
| T |
26647036 |
aattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctcatctaaatttggtgaaaagttgtttgtttcctattgctgttcatctt |
26647135 |
T |
|
| Q |
462 |
gctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaag |
533 |
Q |
| |
|
|||||| | |||||||||||||||| | | |||||| |||||| || |||||||||||| ||| |||||| |
|
|
| T |
26647136 |
gctagagggaatccaattgctttggcaccggctgttttagctagcttatataaggatttaagtttgtttaag |
26647207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 363 - 532
Target Start/End: Original strand, 19951156 - 19951326
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataa-aaaatggtgacaagttgtttgttttctgttgttgttaatctt |
461 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||| ||| |||||| |||| || | | || ||| | || ||||| |
|
|
| T |
19951156 |
aattgaacatgaagccttccttgttacttggttgtcactttttgtttttcctaataataaattggtgaggagttattcgctacctattgctattcatctt |
19951255 |
T |
|
| Q |
462 |
gctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaa |
532 |
Q |
| |
|
|||||| ||||||| |||||||||| ||| |||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
19951256 |
gctagaggaaatcctattgctttggctccagctgttttagctagcatatataaggatttaactttgtttaa |
19951326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 363 - 526
Target Start/End: Original strand, 19956116 - 19956283
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataaaaaatg----gtgacaagttgtttgttttctgttgttgttaat |
458 |
Q |
| |
|
||||||| ||||||| || ||| |||||||||||||||||||||||| ||||||||| | | |||| ||||| ||||||| || |||||||| || |
|
|
| T |
19956116 |
aattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctcataaatattcttccgtgaaaagttatttgtttcctattgttgttcat |
19956215 |
T |
|
| Q |
459 |
cttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaacttt |
526 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
19956216 |
cttgctagaggaaatcctattgctttggcaccagctgttttagctagcatatataaggatttaacttt |
19956283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 163 - 319
Target Start/End: Complemental strand, 20045686 - 20045530
Alignment:
| Q |
163 |
tcaagagttggttcatcaatggaatttgcaataggtttgagtaaattggttgttataagatttggttcactatcactagttgctgagagcatgaaatatt |
262 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| | | ||| ||||| ||||||||||||||| | | | ||| ||||| |||| || |
|
|
| T |
20045686 |
tcaagagttggttcatcaattgaatttgcaataggtttgagtaagtgagccgttctaagagttggttcactatcaccattaggtgaaagcataaaatctt |
20045587 |
T |
|
| Q |
263 |
ccatcacctccatgatgttatcttccaatgattgttcattcattatgggtatgagac |
319 |
Q |
| |
|
|| |||||||||| ||| ||||||| |||| |||||| ||||| ||||| |||||| |
|
|
| T |
20045586 |
ccttcacctccataatggtatcttctaatgtttgttcgttcatcctgggtttgagac |
20045530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 389 - 533
Target Start/End: Original strand, 26653210 - 26653355
Alignment:
| Q |
389 |
cttggttgtcaatttttgtttttcctcataaaaaatg-gtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgctttggt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||| ||||| |||||||||| ||| |||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
26653210 |
cttggttgtcaatttttgtttttcctcatatagaattagtgaaaagttctttgttttctattgctgttcatcttgctagaggaaatcctattgctttggc |
26653309 |
T |
|
| Q |
488 |
ggcagttgttttggctagcataaataaggatttaactttatttaag |
533 |
Q |
| |
|
||| |||||| ||||| ||| ||||||| || ||||| |||||| |
|
|
| T |
26653310 |
accagctgttttagctagtatatataaggacttgactttgtttaag |
26653355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 363 - 747
Target Start/End: Complemental strand, 20016287 - 20015891
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataaaaaatg----gtgacaagttgtttgttttctgttgttgttaat |
458 |
Q |
| |
|
||||||| ||||||| || ||| ||||||| |||||||||||||||| ||||||||| | | |||| ||||||||||||| | ||| | || || |
|
|
| T |
20016287 |
aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccgattgctattcat |
20016188 |
T |
|
| Q |
459 |
cttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaagnnnnnnntc-------tgtcaaaat |
551 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||| ||| |||||||||||| |||| ||||||| ||| |||||| | ||||||||| |
|
|
| T |
20016187 |
cttgctagacgaaatcctattgctttggcaccagctgtcttggctagcatatataaagatttaagtttgtttaagaaaacaattgttgatttgtcaaaat |
20016088 |
T |
|
| Q |
552 |
atcttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaacc |
651 |
Q |
| |
|
||| ||| |||| ||||| |||||||| || |||| ||| |||||| ||||||||| | || ||||| | |||||||||||| || | ||||| |
|
|
| T |
20016087 |
atcatgtgggtggtgataggtatcctttagaagttacacttcaatcacccatttatttggttcaaatttgggtgtgggagaggttcaaaattttacaacc |
20015988 |
T |
|
| Q |
652 |
aca-cccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactca |
747 |
Q |
| |
|
||| |||||||||||||| || |||||||||||| |||||| | ||||||||||||| ||| |||||||||||||| | | |||||||||||| |
|
|
| T |
20015987 |
acaacccatgttgatcaatcatgaagaccctttattgtttaggtggcataaggttcaggctttgaaaattgacaatgttatggtggcattagactca |
20015891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 363 - 533
Target Start/End: Original strand, 19818589 - 19818760
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataa-aaaatggtgacaagttgtttgttttctgttgttgttaatctt |
461 |
Q |
| |
|
||||||| ||||||| || ||| ||||||||| ||||||||||||||||||||||| || |||||| || || | ||||| |||||| |||||||||| |
|
|
| T |
19818589 |
aattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataagaatttggtgaaaaattatctgtttcctgttgctgttaatctt |
19818688 |
T |
|
| Q |
462 |
gctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaag |
533 |
Q |
| |
|
|||||| | ||||| |||||||||| | | ||||||||||| ||| |||| ||||||| ||| |||||| |
|
|
| T |
19818689 |
gctagagggaatcctattgctttggcaccggctgttttggctaacatttataaagatttaagtttgtttaag |
19818760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 363 - 746
Target Start/End: Original strand, 19849022 - 19849423
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataaaaa----atggtgacaagttgtttgttttctgttgttgttaat |
458 |
Q |
| |
|
||||||| ||||||| || ||| ||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||||| || ||| ||| || |
|
|
| T |
19849022 |
aattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttcctattgctgtatat |
19849121 |
T |
|
| Q |
459 |
cttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaagnnnnnnntc-------tgtcaaaat |
551 |
Q |
| |
|
||||||||| |||||| |||||||| | | | |||||| ||||| || |||||||||||||||| |||||| || ||||||||| |
|
|
| T |
19849122 |
cttgctagaggaaatcgtattgctttagcacctgctgttttagctagtctatataaggatttaactttgtttaagaaaacaatcactgatttgtcaaaat |
19849221 |
T |
|
| Q |
552 |
atcttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaacc |
651 |
Q |
| |
|
|| |||||||| ||||| || ||| || | ||||||||| |||||| |||||||||| | || ||||| | |||||||||||| ||| | ||||| |
|
|
| T |
19849222 |
gtcatgttggtggtgatagatttcccttggagattactcttaaatcacccttttatttggttcaaatttgggtgtgggagaggttcaaaaatttgcaacc |
19849321 |
T |
|
| Q |
652 |
ac-------acccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagac |
744 |
Q |
| |
|
|| | ||||||||| |||||| || |||||||| |||| | | ||||||||||||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
19849322 |
acagccacaaaccatgttgaccaaccatggggatcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggcattagac |
19849421 |
T |
|
| Q |
745 |
tc |
746 |
Q |
| |
|
|| |
|
|
| T |
19849422 |
tc |
19849423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 20046161 - 20046086
Alignment:
| Q |
53 |
ttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttcattcttatttgta |
128 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || ||| |||||||| |
|
|
| T |
20046161 |
ttcaatttcactacctttatcgatgaacatatccatccataatgatgtgtaagcatgaccatcgttcctatttgta |
20046086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 363 - 533
Target Start/End: Complemental strand, 20036689 - 20036515
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataaaaa----atggtgacaagttgtttgttttctgttgttgttaat |
458 |
Q |
| |
|
||||||| ||||||| || ||| ||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||||| || ||| ||| || |
|
|
| T |
20036689 |
aattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttggtgaaaagttctttgtttcctattgctgtatat |
20036590 |
T |
|
| Q |
459 |
cttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaag |
533 |
Q |
| |
|
||||||||| |||||| |||||||| | | | |||||| ||||| || |||||||||||||||| |||||| |
|
|
| T |
20036589 |
cttgctagaggaaatcgtattgctttagcacctgctgttttagctagtctatataaggatttaactttgtttaag |
20036515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 618 - 745
Target Start/End: Original strand, 17115011 - 17115139
Alignment:
| Q |
618 |
tttggatacgggagaggttcacaaactatcaaccacac-ccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgca |
716 |
Q |
| |
|
||||||| |||||||||||| ||| | |||||||| |||||||||||||||| |||||||||||| |||||| | ||| |||||||||| || | |
|
|
| T |
17115011 |
tttggatgtgggagaggttcaaaaatttacaaccacaatccatgttgatcaaccatggagaccctttattgtttaggtggcatagggttcaggccgtgaa |
17115110 |
T |
|
| Q |
717 |
aattgacaatgttcagtttgcattagact |
745 |
Q |
| |
|
||||||||||||| || | |||||||||| |
|
|
| T |
17115111 |
aattgacaatgttaagctagcattagact |
17115139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 387 - 526
Target Start/End: Original strand, 19838449 - 19838592
Alignment:
| Q |
387 |
tacttggttgtcaatttttgtttttcctcataaaaaatg----gtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||| || || | | |||| ||| | ||||||| | |||||||| ||||||||||| ||||| | |||||| |
|
|
| T |
19838449 |
tacttggttgtcaatttttgtttttcctaatcaacactcttgcgtgaaaagctttttgtttccaattgttgttcatcttgctagaggaaattctattgct |
19838548 |
T |
|
| Q |
483 |
ttggtggcagttgttttggctagcataaataaggatttaacttt |
526 |
Q |
| |
|
|||| ||| |||||| ||||||||| |||| ||||||||||| |
|
|
| T |
19838549 |
ttggcaccagctgttttagctagcatatataatgatttaacttt |
19838592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 19812312 - 19812369
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataaa |
420 |
Q |
| |
|
||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19812312 |
aattgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaa |
19812369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 654 - 746
Target Start/End: Original strand, 19858404 - 19858496
Alignment:
| Q |
654 |
acccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactc |
746 |
Q |
| |
|
||||||||||||||| || ||| |||||||| |||||| | |||||||| |||||||| || ||||||||||| |||| ||||||||||| |
|
|
| T |
19858404 |
acccatgttgatcaagcatggagaacctttattgtttaggtggcataaggttaaggccttgaaagttgacaatgttaagttggcattagactc |
19858496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 30914675 - 30914728
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctca |
416 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
30914675 |
aattgaacatgaagcattccttactacttggttgtcaatttttgttttccctca |
30914728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 19853544 - 19853599
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcata |
418 |
Q |
| |
|
||||||| ||||||| || ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
19853544 |
aattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcata |
19853599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 19943192 - 19943133
Alignment:
| Q |
252 |
catgaaatattccatcacctccatgatgttatcttccaatgattgttcattcattatggg |
311 |
Q |
| |
|
|||||||| |||| ||| |||||||||| |||||| ||||| |||||||||||| ||||| |
|
|
| T |
19943192 |
catgaaatcttccctcatctccatgatgctatctttcaatggttgttcattcatcatggg |
19943133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 19838431 - 19838385
Alignment:
| Q |
53 |
ttcaatttcactacatttatcgatgaacatatccatccataatgatg |
99 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
19838431 |
ttcaatttcgctacctttatcgatgaaaatatccatccatagtgatg |
19838385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 19943758 - 19943720
Alignment:
| Q |
53 |
ttcaatttcactacatttatcgatgaacatatccatcca |
91 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
19943758 |
ttcaatttcactacctttatcgatgaaaatatccatcca |
19943720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 19956122 - 19956076
Alignment:
| Q |
53 |
ttcaatttcactacatttatcgatgaacatatccatccataatgatg |
99 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||||| ||||| |
|
|
| T |
19956122 |
ttcaatttcactacctttatcaatgaaaatatccatccatagtgatg |
19956076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 387 - 522
Target Start/End: Complemental strand, 24840036 - 24839897
Alignment:
| Q |
387 |
tacttggttgtcaatttttgtttttcctcataaaaa----atggtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgct |
482 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| | | |||| | ||| ||||||| |||||| |||| |||| |||||| | ||||| ||| || |
|
|
| T |
24840036 |
tacttggttgtcaatttttgttttccctcataaatactctctagtgaaatgttctttgtttcctgttgctgttcatctagctagagggaatcctatttct |
24839937 |
T |
|
| Q |
483 |
ttggtggcagttgttttggctagcataaataaggatttaa |
522 |
Q |
| |
|
|||| | | ||||||||||||| || |||| ||||||| |
|
|
| T |
24839936 |
ttggcacctgctgttttggctagcttatataacgatttaa |
24839897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 19858109 - 19858072
Alignment:
| Q |
54 |
tcaatttcactacatttatcgatgaacatatccatcca |
91 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
19858109 |
tcaatttcactacctttatcgatgaaaatatccatcca |
19858072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 636
Target Start/End: Original strand, 19951344 - 19951437
Alignment:
| Q |
543 |
tgtcaaaatatcttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggtt |
636 |
Q |
| |
|
|||||||||||| ||| |||| ||||| ||||||||| || |||||||| |||||| ||||| |||| | || ||||||| |||||||||| |
|
|
| T |
19951344 |
tgtcaaaatatcatgtgggtggtgatagatatcctttagaacttactcttcaatcacccttttacttggttcaaatttggatttgggagaggtt |
19951437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 26646475 - 26646422
Alignment:
| Q |
261 |
ttccatcacctccatgatgttatcttccaatgattgttcattcattatgggtat |
314 |
Q |
| |
|
|||| |||||||||| || |||||||||||| |||||||||||| |||||||| |
|
|
| T |
26646475 |
ttccttcacctccataatagtatcttccaatgtttgttcattcatcatgggtat |
26646422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 3e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 363 - 753
Target Start/End: Complemental strand, 6397824 - 6397423
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcat-aaaaaatggtgacaag--ttgtttgttttctgttgttgttaatc |
459 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||||||||||| || |||||||| | |||||||||||| ||| ||||||| ||||| || |||||||| |
|
|
| T |
6397824 |
aattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaaaaaatggtgaaaagttttgtttgctttctattaatgttaatc |
6397725 |
T |
|
| Q |
460 |
ttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaag-------nnnnnnntctgtcaaaata |
552 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||||||| |||| ||||||||||| ||||||||||| | |||| ||||| |
|
|
| T |
6397724 |
ttgctagagaaaatccaattgctttggcaccatctgttttggctatcatatataaggatttatctttatttaagaaaacaattattgatttgtcgaaata |
6397625 |
T |
|
| Q |
553 |
tcttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaacca |
652 |
Q |
| |
|
||||||||||||||||| || || | || ||||||||||| ||||||||||||| |||| | |||||||| || ||||||||||| | | | || |
|
|
| T |
6397624 |
tcttgttggtgatgataaatttcatgttgaatttactcttctatcacctttttacttggttcaagtttgggcgtggaagaggttcacacatttgcgttca |
6397525 |
T |
|
| Q |
653 |
c-acccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactcaagtg |
751 |
Q |
| |
|
| ||| |||||||| | |||||||||||||||||| |||||| | |||||||||||||||| ||||||||||| || |||| |||| |||||||| || |
|
|
| T |
6397524 |
caacctatgttgattacccacatagaccctttattttttaggtggtataaggttcaggcctttaaaattgacaatattaagttggcatgagactcaactg |
6397425 |
T |
|
| Q |
752 |
tc |
753 |
Q |
| |
|
|| |
|
|
| T |
6397424 |
tc |
6397423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 363 - 686
Target Start/End: Original strand, 6398293 - 6398628
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataaaa-aatggtgacaagttgtttgttttctgttgttgttaatctt |
461 |
Q |
| |
|
||||||| |||||||||||||| || |||||||| |||||||||||||||| ||||| |||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
6398293 |
aattgaacatgaagccttccttgctaattggttgttaatttttgtttttcctagtaaaacaatggtgaaaagttgtttgttttctattgctgttaatctc |
6398392 |
T |
|
| Q |
462 |
gctagaagaaatccaattgctttggtggcagttgttttggctagc--ataaataaggatttaactttatttaag--------nnnnnnntctgtcaaaat |
551 |
Q |
| |
|
|||||| |||||||||| | ||||| ||| |||||| |||||| ||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
6398393 |
gctagaggaaatccaatcggtttggcaccagctgttttagctagcatatatataaggatttaactttatttaagaaaaaaaattattgatatgtcaaaat |
6398492 |
T |
|
| Q |
552 |
atcttgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaacc |
651 |
Q |
| |
|
||| ||||| |||||||| || |||| || |||||||||| | ||||||||||| ||| | |||||| | | |||||||||||||||||| ||||| |
|
|
| T |
6398493 |
atcatgttgatgatgatagatttcctgttgaatttactctgttgtcacctttttacgtggttcaagtttaggtgtgggagaggttcacaaacttgcaacc |
6398592 |
T |
|
| Q |
652 |
ac-acccatgttgatcaaccacatagaccctttatt |
686 |
Q |
| |
|
|| || ||||||||||||| ||| | || ||||||| |
|
|
| T |
6398593 |
acaactcatgttgatcaacaacagacactctttatt |
6398628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 6397818 - 6397919
Alignment:
| Q |
53 |
ttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttcattcttatttgtaggttgacctctttcaaggatcaat |
152 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||| |||||| ||||||||| |
|
|
| T |
6397818 |
ttcaatttcactacctttatcgatgaacatatccatccataatgatatgtaagcatgaccttcattcctatttgtaagttgctttctttctaggatcaat |
6397917 |
T |
|
| Q |
153 |
tt |
154 |
Q |
| |
|
|| |
|
|
| T |
6397918 |
tt |
6397919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 6398299 - 6398192
Alignment:
| Q |
53 |
ttcaatttcactacatttatcgatgaacatatccatccataatgatgggtaagtgtgaccttcattcttatttgtaggttgacctctttcaaggatcaat |
152 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||||||||||| ||| ||||||| |||||| |||| |||| ||| ||| |||||| ||||||||| |
|
|
| T |
6398299 |
ttcaatttcactacctttatagataaacatatccatccataactatgtgtaagtgggacctttattcgtattggtaagtttctttctttctaggatcaat |
6398200 |
T |
|
| Q |
153 |
ttgctttc |
160 |
Q |
| |
|
||| |||| |
|
|
| T |
6398199 |
ttgttttc |
6398192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 426 - 533
Target Start/End: Complemental strand, 22651912 - 22651805
Alignment:
| Q |
426 |
gtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactt |
525 |
Q |
| |
|
|||| ||||||||||||| || ||| |||| ||||||||||| ||||||| |||||||| | ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
22651912 |
gtgaaaagttgtttgtttcctattgctgttcatcttgctagaggaaatcctattgcttttgcaccagctgttttggctagcatgtataaggatttaactt |
22651813 |
T |
|
| Q |
526 |
tatttaag |
533 |
Q |
| |
|
| |||||| |
|
|
| T |
22651812 |
tgtttaag |
22651805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 365 - 533
Target Start/End: Complemental strand, 22689739 - 22689567
Alignment:
| Q |
365 |
ttgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataaaaa-at---ggtgacaagttgtttgttttctgttgttgttaatct |
460 |
Q |
| |
|
||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||| || ||| | ||||| ||||||| || || | || |||| |
|
|
| T |
22689739 |
ttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaaaatatgtcggtcaaaagttctttgtttactatttctattcatct |
22689640 |
T |
|
| Q |
461 |
tgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaag |
533 |
Q |
| |
|
|||||| | ||| | |||||||||| | | |||||||||||||||| |||||||||| | ||| |||||| |
|
|
| T |
22689639 |
ggctagaggcaatactattgctttggcacctgctgttttggctagcatatataaggatttgagtttgtttaag |
22689567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 22652174 - 22652119
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcata |
418 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
22652174 |
aattgaacatgaagcgttccttgctacttggttgtcaatttttgtttttgctcata |
22652119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 22652168 - 22652211
Alignment:
| Q |
53 |
ttcaatttcactacatttatcgatgaacatatccatccataatg |
96 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
22652168 |
ttcaatttcactacctttatcgatgaaaatatccatccataatg |
22652211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 556 - 746
Target Start/End: Original strand, 9815270 - 9815461
Alignment:
| Q |
556 |
tgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaaccaca- |
654 |
Q |
| |
|
|||||||| ||||| ||||||||| || |||||||| |||||| ||||| |||| | || ||||| | ||||||||||| ||| | || ||| | |
|
|
| T |
9815270 |
tgttggtggtgatagatatcctttagaagttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttccaaaatttacagccagaa |
9815369 |
T |
|
| Q |
655 |
cccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgcaaattgacaatgttcagtttgcattagactc |
746 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||| || | ||||||||||| |
|
|
| T |
9815370 |
cccatgttgatcaatcacggagaccctttattgtttaggtgacataaggttcaggccttgaaaattgacaatgttaagctggcattagactc |
9815461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 729
Target Start/End: Complemental strand, 26354809 - 26354635
Alignment:
| Q |
556 |
tgttggtgatgatatatatcctttttaatttactcttatatcacctttttatttggcttaagtttggatacgggagaggttcacaaactatcaaccac-a |
654 |
Q |
| |
|
|||||||| ||||| ||||||||| || |||||||| |||||| ||||| |||| | || ||||| | |||||||||||| ||| | ||||| | | |
|
|
| T |
26354809 |
tgttggtggtgatagatatcctttagaagttactcttcaatcaccgttttacttggttcaaatttgggtgtgggagaggttcaaaaaattacaaccgcaa |
26354710 |
T |
|
| Q |
655 |
cccatgttgatcaaccacatagaccctttattacttaggttgaataaggttcaggccttgcaaattgacaatgtt |
729 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| | | ||| ||| || |||||| |||||||||||||| |
|
|
| T |
26354709 |
cccatgttgatcaaccgtggagaccctttattgtttagatggcatagggtacaagccttgaaaattgacaatgtt |
26354635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 533
Target Start/End: Original strand, 9815097 - 9815240
Alignment:
| Q |
391 |
tggttgtcaatttttgtttttcctcataaa-aaatggtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgctttggtgg |
489 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||| ||||| |||||||||| ||| | || ||||||||||| ||||| | |||||||||| |
|
|
| T |
9815097 |
tggttgtcaatctttgttttaactcataaatctttggtgaaaagttctttgttttctattgctattcatcttgctagaggaaattctattgctttggcac |
9815196 |
T |
|
| Q |
490 |
cagttgttttggctagcataaataaggatttaactttatttaag |
533 |
Q |
| |
|
||| |||||| ||||| || |||| ||||||| ||| |||||| |
|
|
| T |
9815197 |
cagctgttttagctagtatttataacgatttaagtttgtttaag |
9815240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 522
Target Start/End: Complemental strand, 26354948 - 26354850
Alignment:
| Q |
424 |
tggtgacaagttgtttgttttctgttgttgttaatcttgctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaa |
522 |
Q |
| |
|
|||||| ||||| ||||||| || ||| | || ||||||||||| ||||| | |||||||||| | | |||||| ||||||||| |||||||||||| |
|
|
| T |
26354948 |
tggtgaaaagttctttgtttcctattgctattcatcttgctagaggaaattctattgctttggcaccggctgttttagctagcatatataaggatttaa |
26354850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 363 - 533
Target Start/End: Original strand, 1717246 - 1717417
Alignment:
| Q |
363 |
aattgaagatgaagccttcctttttacttggttgtcaatttttgtttttcctcataaaaaat-ggtgacaagttgtttgttttctgttgttgttaatctt |
461 |
Q |
| |
|
||||||| ||||||| || ||| |||||||||||| ||| |||||||||||||||| | ||||| || | ||||||| || ||| |||| ||||| |
|
|
| T |
1717246 |
aattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaagctttggtgaaaaaatctttgtttcctattgctgttcatctt |
1717345 |
T |
|
| Q |
462 |
gctagaagaaatccaattgctttggtggcagttgttttggctagcataaataaggatttaactttatttaag |
533 |
Q |
| |
|
|||||| ||||||| |||||||||| | | |||||| ||||||||| |||||||||||||||| |||||| |
|
|
| T |
1717346 |
gctagaggaaatcctattgctttggcaccggctgttttagctagcatatataaggatttaactttgtttaag |
1717417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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