View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20260_low_10 (Length: 269)

Name: NF20260_low_10
Description: NF20260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20260_low_10
NF20260_low_10
[»] chr6 (5 HSPs)
chr6 (1-250)||(14905269-14905518)
chr6 (69-245)||(14904923-14905099)
chr6 (69-187)||(14905544-14905662)
chr6 (114-245)||(14904761-14904892)
chr6 (70-247)||(14905131-14905308)
[»] chr2 (6 HSPs)
chr2 (69-250)||(32717030-32717211)
chr2 (75-219)||(32716647-32716791)
chr2 (75-187)||(32716472-32716584)
chr2 (69-247)||(32717240-32717418)
chr2 (82-187)||(32714058-32714163)
chr2 (75-219)||(32716854-32716998)
[»] chr5 (5 HSPs)
chr5 (69-191)||(2998186-2998307)
chr5 (91-247)||(2997923-2998079)
chr5 (165-247)||(2998543-2998625)
chr5 (69-245)||(2998338-2998514)
chr5 (69-187)||(2997776-2997894)
[»] chr8 (4 HSPs)
chr8 (109-229)||(34534099-34534219)
chr8 (107-219)||(34916660-34916772)
chr8 (107-187)||(34544940-34545020)
chr8 (108-187)||(39848031-39848110)
[»] chr4 (1 HSPs)
chr4 (138-186)||(44474135-44474183)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 14905269 - 14905518
Alignment:
Q  1 taccaacatagacatccccattggaatgtgtaaaggtgccgtgaccatgaccaatatcattctcccagtcaccatcaaaatttgctcctgatggatataa 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14905269 taccaacgtagacatccccattggaatgtgtaaaggtgccgtgaccatgaccaatatcattctcccagtcaccatcaaaatttgctcctgatggatataa 14905368  T
Q  101 gatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaaagaaccactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14905369 gatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaaagaaccactc 14905468  T
Q  201 ttgaagttaccaatgtagagattcccgttggattttgtaagggtgccttg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14905469 ttgaagttaccaatgtagagattcccgttggattttgtaagggtgccttg 14905518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 69 - 245
Target Start/End: Original strand, 14904923 - 14905099
Alignment:
Q  69 tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg 168  Q
    ||||| |||||| || ||||||||||| |||  ||||||||||| |||||||||||||| ||||||||||||||||||||||| | |||| |||||||||    
T  14904923 tcaccctcaaaactttctcctgatggaaatatcatccgccctttccctgtcttttttccatcaacccagtcaccctcatatatttgtccacctgaccatg 14905022  T
Q  169 tgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtg 245  Q
    |||||||||||||||||||||||  |||| |||  ||||||||||| ||||||| |||||||||| |||||||||||    
T  14905023 tgtactttcccttgccatggaaaagaccattctcaaagttaccaatatagagatccccgttggatcttgtaagggtg 14905099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 14905544 - 14905662
Alignment:
Q  69 tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg 168  Q
    ||||| |||||| ||||||||||||||||||  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||| |||||||||||||     
T  14905544 tcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatc 14905643  T
Q  169 tgtactttcccttgccatg 187  Q
    ||||| |||| ||||||||    
T  14905644 tgtacattcctttgccatg 14905662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 14904761 - 14904892
Alignment:
Q  114 cctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaaagaaccactcttgaagttaccaa 213  Q
    |||||| || |||| |||||||| |||||||||||||| | |||||  ||||||||||| ||||| ||||||||||||  | || |||||||||||||||    
T  14904761 cctgtccttcttccatcaacccaatcaccctcatatatttttccattcgaccatgtgtattttcctttgccatggaaaagatcattcttgaagttaccaa 14904860  T
Q  214 tgtagagattcccgttggattttgtaagggtg 245  Q
    |||||| || ||||||||||||| ||||||||    
T  14904861 tgtagacatccccgttggattttataagggtg 14904892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 247
Target Start/End: Original strand, 14905131 - 14905308
Alignment:
Q  70 caccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgt 169  Q
    |||| |||||| ||||| |||||||| | |  || || ||||| |||||| |  |||| | |||||| |||||||||||||| ||||| |||||||||||    
T  14905131 caccctcaaaacttgcttctgatggaaagatcattcgtcctttccctgtcctgcttccataaacccaatcaccctcatatatttctccctctgaccatgt 14905230  T
Q  170 gtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgcc 247  Q
    | ||||||||||||||||||||  |  | ||| ||||||||||| ||||| || ||| ||||| | ||||| ||||||    
T  14905231 gcactttcccttgccatggaaaagattattctcgaagttaccaacgtagacatccccattggaatgtgtaaaggtgcc 14905308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 32717211 - 32717030
Alignment:
Q  69 tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg 168  Q
    ||||| |||||| ||| |||||||||||||| |||| | ||||| || ||| || |||| |||||||| |||||||| ||||| |||||||||| |||||    
T  32717211 tcaccctcaaaagttgatcctgatggatatatgatctgacctttcccagtcattcttccatcaacccaatcaccctcgtatatttctccatctggccatg 32717112  T
Q  169 tgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgccttg 250  Q
    |||||||||||||||||| ||||  | |||||||||||||||||||||||| || ||| |||||| | ||||||||||||||    
T  32717111 tgtactttcccttgccattgaaaagatcactcttgaagttaccaatgtagacatgcccattggatatggtaagggtgccttg 32717030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 32716791 - 32716647
Alignment:
Q  75 tcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtact 174  Q
    |||||| |||||||||||||||||| |||||||||||| |||||| ||||||| |||||||| ||||||||||||||   ||||| | |||| |||||||    
T  32716791 tcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttaaccacgtgtact 32716692  T
Q  175 ttcccttgccatggaaagaaccactcttgaagttaccaatgtaga 219  Q
    |||||||||||||||||  | |||||| ||||||||||| |||||    
T  32716691 ttcccttgccatggaaaagatcactctcgaagttaccaacgtaga 32716647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 32716584 - 32716472
Alignment:
Q  75 tcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtact 174  Q
    |||||| |||||||||||||||||| |||||||||||| |||||| ||||||| |||||||| ||||||||||||||   ||||| ||||||||||||||    
T  32716584 tcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatgtgtact 32716485  T
Q  175 ttcccttgccatg 187  Q
    |||||||||||||    
T  32716484 ttcccttgccatg 32716472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 247
Target Start/End: Complemental strand, 32717418 - 32717240
Alignment:
Q  69 tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg 168  Q
    ||||| |||||| ||||||||||||||||||  ||||| ||||| |||||| || |||| |||||||| |||||||| |||||   ||||||| ||||||    
T  32717418 tcaccctcaaaacttgctcctgatggatatattatccgtcctttccctgtccttcttccatcaacccaatcaccctcgtatattgttccatctaaccatg 32717319  T
Q  169 tgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgcc 247  Q
    |||||||||| ||||||||| ||  | |||||| ||||||||||||||||| || ||| |  |||||| ||||||||||    
T  32717318 tgtactttcctttgccatggtaaagatcactctcgaagttaccaatgtagatatccccatcagattttttaagggtgcc 32717240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 32714163 - 32714058
Alignment:
Q  82 ttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttccctt 181  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||| |||||||| ||||||||||||||   ||||| |||||||||||||||||||||    
T  32714163 ttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatgtgtactttccctt 32714064  T
Q  182 gccatg 187  Q
    ||||||    
T  32714063 gccatg 32714058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 32716998 - 32716854
Alignment:
Q  75 tcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtact 174  Q
    |||||| ||| ||||||| ||||||  ||  ||||||| |||||| || |||| |||||||| ||||| || |||||   ||||| ||||||||||||||    
T  32716998 tcaaaacttgttcctgatagatatatcatttgccctttccctgtccttcttccatcaacccaatcaccatcgtatattgttccatgtgaccatgtgtact 32716899  T
Q  175 ttcccttgccatggaaagaaccactcttgaagttaccaatgtaga 219  Q
    |||| ||||||||||||  | |||||| ||||||||||| |||||    
T  32716898 ttcctttgccatggaaaagatcactctcgaagttaccaacgtaga 32716854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 191
Target Start/End: Complemental strand, 2998307 - 2998186
Alignment:
Q  69 tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg 168  Q
    ||||| |||||| ||| |||||||||||||| |||||| ||||| |||||| ||| | | |||||||| ||||||||||||||   ||||| ||||||||    
T  2998307 tcaccctcaaaacttgttcctgatggatatatgatccgtcctttccctgtcctttgttcatcaacccaatcaccctcatatattgttccatttgaccatg 2998208  T
Q  169 tgtactttcccttgccatggaaa 191  Q
    ||| ||||||| |||||||||||    
T  2998207 tgtgctttccc-tgccatggaaa 2998186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 2998079 - 2997923
Alignment:
Q  91 atggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaa 190  Q
    |||||||||  || || ||||| ||||||  | |||| |||||||| ||||||||||||||   ||||  ||||||||||||||||||||||||||||||    
T  2998079 atggatatattattcgtcctttccctgtccgtcttccatcaacccaatcaccctcatatattgttccacttgaccatgtgtactttcccttgccatggaa 2997980  T
Q  191 agaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgcc 247  Q
    |  | || | |  |||||||||||| ||| || ||| |||||||||||||| |||||    
T  2997979 aagatcattttcaaagttaccaatgaagacatccccattggattttgtaagagtgcc 2997923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 2998625 - 2998543
Alignment:
Q  165 catgtgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgcc 247  Q
    ||||||||||||||||||||||| |||  | || ||| ||||||||||| ||||| || ||| ||||||||||||||||||||    
T  2998625 catgtgtactttcccttgccatgaaaaatatcattctcgaagttaccaacgtagatatccccattggattttgtaagggtgcc 2998543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 245
Target Start/End: Complemental strand, 2998514 - 2998338
Alignment:
Q  69 tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg 168  Q
    ||||| |||||| ||| |||||||| ||||| |||||| ||||| |||||| || |||| |||| |||  ||||||  |||||   ||||| ||||||      
T  2998514 tcaccctcaaaaattgatcctgatgaatatatgatccgacctttccctgtccttcttccatcaaaccaaccacccttgtatattgttccatttgaccaca 2998415  T
Q  169 tgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtg 245  Q
    |||||||||| ||||||||||||  | |  | | ||||||||||| ||||| || ||| | ||||||||| ||||||    
T  2998414 tgtactttccgttgccatggaaaagatcgttatcgaagttaccaacgtagatatccccatcggattttgtcagggtg 2998338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 2997894 - 2997776
Alignment:
Q  69 tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg 168  Q
    ||||| |||||| |||||| ||| |||| || || | | ||||| || ||| ||||| | | |||||| ||||||||||| ||   ||||  ||||||||    
T  2997894 tcaccctcaaaacttgctcttgacggatttatgaccggtcctttcccagtccttttttcattaacccaatcaccctcatagattgttccacttgaccatg 2997795  T
Q  169 tgtactttcccttgccatg 187  Q
    |||||||||||||||||||    
T  2997794 tgtactttcccttgccatg 2997776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 34534099 - 34534219
Alignment:
Q  109 ctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaaagaaccactcttgaagtt 208  Q
    |||| |||||| ||| ||| |||||||| || |||||||||||   ||||||||||||||||||||| || ||||||||  ||    ||| |||||||||    
T  34534099 ctttccctgtcatttgtccatcaacccaatcgccctcatatattgttccatctgaccatgtgtacttcccgttgccatgacaaagttcacccttgaagtt 34534198  T
Q  209 accaatgtagagattcccgtt 229  Q
    ||||||||||| || ||||||    
T  34534199 accaatgtagacatccccgtt 34534219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 34916660 - 34916772
Alignment:
Q  107 ccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatggaaagaaccactcttgaag 206  Q
    |||||| ||||||  |||||| ||||||||||||||||| |||||   ||||| || |||||||||||||||| ||||||||| |    ||| ||||||     
T  34916660 ccctttccctgtcacttttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttcccatgccatggagaagttcacccttgaat 34916759  T
Q  207 ttaccaatgtaga 219  Q
    |||||||||||||    
T  34916760 ttaccaatgtaga 34916772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 34544940 - 34545020
Alignment:
Q  107 ccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatg 187  Q
    |||||| |||||| ||||||| ||||||||||||||||| |||||   ||||| || |||||||||||||||  |||||||    
T  34544940 ccctttccctgtcatttttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttccgatgccatg 34545020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 39848110 - 39848031
Alignment:
Q  108 cctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatgtgtactttcccttgccatg 187  Q
    ||||| |||||||| | ||| |||||||| |||||| |||||||   |||||||||||||||||||||||  ||||||||    
T  39848110 cctttccctgtcttatctccatcaacccaatcacccacatatattgatccatctgaccatgtgtactttcttttgccatg 39848031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 44474183 - 44474135
Alignment:
Q  138 tcaccctcatatatctctccatctgaccatgtgtactttcccttgccat 186  Q
    ||||||||||||||   |||||||||||||||||||||||| |||||||    
T  44474183 tcaccctcatatattgatccatctgaccatgtgtactttccgttgccat 44474135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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