View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20260_low_12 (Length: 254)
Name: NF20260_low_12
Description: NF20260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20260_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 16086257 - 16086022
Alignment:
| Q |
19 |
agacttgacatgaaagccaacaattcattcttcaaagctggtatccatccctacaaattacagcataaaataagcaaaaagagagaaagaatgtaacaat |
118 |
Q |
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| T |
16086257 |
agacttgacatgaaagccaacaattcattcttcaaagctggtatccatccctacaaattacagcataaaataagcaaaaagagagaaagaatgtaacaat |
16086158 |
T |
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| Q |
119 |
tatatatggtttcacctactagattatcaacttatgagatgcaatttctggatataatttgnnnnnnnnnnnnncaataaggtaacttactttaattgaa |
218 |
Q |
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| T |
16086157 |
tatatatggtttcacctactagattatcaacttatgagatgcaatttctggatataatttgttttttcatttttcaataaggtaacttactttaattgaa |
16086058 |
T |
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| Q |
219 |
tggagagctcgtatataaggagaactcaaaacaatt |
254 |
Q |
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| T |
16086057 |
tggagagctcgtatataaggagaactcaaaacaatt |
16086022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 16080856 - 16080799
Alignment:
| Q |
23 |
ttgacatgaaagccaacaattcattcttcaaagctggtatccatccctacaaattaca |
80 |
Q |
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|||| ||||||| | ||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
16080856 |
ttgatatgaaagtccacagttcattcttcaaagctggtatccactcctacaaattaca |
16080799 |
T |
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