View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20260_low_14 (Length: 247)
Name: NF20260_low_14
Description: NF20260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20260_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24355705 - 24355944
Alignment:
| Q |
1 |
caacaatacaaaacaacacaagcatgaaacagaatccagcagaagcaatttgaaacagcccaattacaattttaagtcgcaggttgtattaaaatcaaac |
100 |
Q |
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| T |
24355705 |
caacaatacaaaacaacacaagcatgaaacagaatccagcagaagcaatttgaaacagcccaattacaattttaagtcgcaggttgtattaaaatcaaac |
24355804 |
T |
|
| Q |
101 |
cgagttattaaccaggattgaaaagcataatgtttttcttaaaccaaaattgatatgctaaagcatactctgatagctgacatcccggctatattgacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24355805 |
cgagttattaaccaggattgaaaagcataatgtttttcttaaaccaaaattgatatgctaaagcatactctgataactgacatcccggctatattgacac |
24355904 |
T |
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| Q |
201 |
ctcatgcgaaacttggtcgattagacatacttgacctttg |
240 |
Q |
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| T |
24355905 |
ctcatgagaaacttggtcgattagacatacttgacctttg |
24355944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 24381090 - 24381275
Alignment:
| Q |
40 |
cagaagcaatttgaaacagcccaattacaattttaagtcgcaggttgt-------attaaaatcaaaccgagttattaaccaggattgaaaagcataatg |
132 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24381090 |
cagatgcaatttgaaacaacccaattacaattttaagtcgcaggttgtcggttgcattaaaatcaaaccgagttattaaccaggattgaaaagcatcatg |
24381189 |
T |
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| Q |
133 |
tttttcttaaaccaaaattgatatgctaaagcatactctgatagctgacatcccggctatattgacacctcatgcgaaacttggtc |
218 |
Q |
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| T |
24381190 |
tttttcttaaaccaaaattgatatgctaaagcatactatgataactgacatcccggctatattgacacctcacatgaaacttggtc |
24381275 |
T |
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