View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20260_low_2 (Length: 462)
Name: NF20260_low_2
Description: NF20260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20260_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 12930602 - 12931044
Alignment:
| Q |
1 |
aagctcaaagaaaagacaagcttcatcaatgaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagt |
100 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930602 |
aagctcaaagaaaatacaagcttcagtattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagt |
12930701 |
T |
|
| Q |
101 |
aaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
12930702 |
aaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgg |
12930801 |
T |
|
| Q |
201 |
gaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930802 |
gaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtgg |
12930899 |
T |
|
| Q |
301 |
tctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttgg |
398 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
12930900 |
tttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttgg |
12930999 |
T |
|
| Q |
399 |
aattttaatttacacttgcgttaagctcgtcgagcccaacaagtg |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931000 |
aattttaatttacacttgcgttaagctcgtcgagcccaacaagtg |
12931044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 12935348 - 12935786
Alignment:
| Q |
1 |
aagctcaaagaaaagacaagcttcatcaatgaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagt |
100 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935348 |
aagctcaaagaaaatacaagcttcagtattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagt |
12935447 |
T |
|
| Q |
101 |
aaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
12935448 |
aaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgg |
12935547 |
T |
|
| Q |
201 |
gaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935548 |
gaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtgg |
12935645 |
T |
|
| Q |
301 |
tctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttgg |
398 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||| ||||||| |
|
|
| T |
12935646 |
tttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttgg |
12935745 |
T |
|
| Q |
399 |
aattttaatttacacttgcgttaagctcgtcgagcccaaca |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935746 |
aattttaatttacacttgcgttaagctcgtcgagcccaaca |
12935786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 346
Target Start/End: Complemental strand, 26505063 - 26504945
Alignment:
| Q |
226 |
tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttt |
325 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||| ||| ||| ||||||| ||| | |
|
|
| T |
26505063 |
tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggt-tttgccttgttattagacggtat |
26504965 |
T |
|
| Q |
326 |
tccacgttaaatattggtgtt |
346 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
26504964 |
t-cacgttaaatattgatgtt |
26504945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
| Q |
236 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa |
335 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || | |||| |||| || ||||||||||| || ||| |
|
|
| T |
15588948 |
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa |
15589047 |
T |
|
| Q |
336 |
atattggtgttca |
348 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
15589048 |
atattgatgttca |
15589060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
| Q |
386 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcga |
431 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||| |||||||| |
|
|
| T |
26504895 |
ttttggattttgaaattttaatttacacttccattaaactcgtcga |
26504850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 34907065 - 34907503
Alignment:
| Q |
1 |
aagctcaaagaaaagacaagcttcatcaatgaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagt |
100 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907065 |
aagctcaaagaaaatacaagcttcagtattgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagt |
34907164 |
T |
|
| Q |
101 |
aaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
34907165 |
aaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgg |
34907264 |
T |
|
| Q |
201 |
gaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907265 |
gaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtgg |
34907362 |
T |
|
| Q |
301 |
tctttccctcagtattagagggttttccacgttaaatattggtgttca--nnnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttgg |
398 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
34907363 |
tttttccctcggtattagagggttttccacgttaaatattggtgttcatttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttgg |
34907462 |
T |
|
| Q |
399 |
aattttaatttacacttgcgttaagctcgtcgagcccaaca |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907463 |
aattttaatttacacttgcgttaagctcgtcgagcccaaca |
34907503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 25 - 440
Target Start/End: Original strand, 14178641 - 14179057
Alignment:
| Q |
25 |
atcaatgaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
124 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178641 |
atcaatgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
14178740 |
T |
|
| Q |
125 |
acaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178741 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgt |
14178840 |
T |
|
| Q |
225 |
gtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggtt |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
14178841 |
gtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtt |
14178938 |
T |
|
| Q |
325 |
ttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgtta |
421 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178939 |
ttccacgttaaatattggtgttcattttttttattgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgtta |
14179038 |
T |
|
| Q |
422 |
agctcgtcgagcccaacaa |
440 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14179039 |
agctcgtcgagcccaacaa |
14179057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 25 - 443
Target Start/End: Original strand, 14173887 - 14174306
Alignment:
| Q |
25 |
atcaatgaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
124 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173887 |
atcaatgaagcagaagtgaaaatacaaagtttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaat |
14173986 |
T |
|
| Q |
125 |
acaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173987 |
acaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgt |
14174086 |
T |
|
| Q |
225 |
gtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggtt |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
14174087 |
gtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtt |
14174184 |
T |
|
| Q |
325 |
ttccacgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgtta |
421 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174185 |
ttccacgttaaatattggtgttcattttttttatcactaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgtta |
14174284 |
T |
|
| Q |
422 |
agctcgtcgagcccaacaagtg |
443 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14174285 |
agctcgtcgagcccaacaagtg |
14174306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 31 - 443
Target Start/End: Complemental strand, 28611977 - 28611564
Alignment:
| Q |
31 |
gaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
130 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611977 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
28611878 |
T |
|
| Q |
131 |
ggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611877 |
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt |
28611778 |
T |
|
| Q |
231 |
gagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccac |
330 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |
|
|
| T |
28611777 |
gag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcac |
28611680 |
T |
|
| Q |
331 |
gttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcg |
427 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611679 |
gttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcg |
28611580 |
T |
|
| Q |
428 |
tcgagcccaacaagtg |
443 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28611579 |
tcgagcccaacaagtg |
28611564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 31 - 440
Target Start/End: Complemental strand, 28607215 - 28606805
Alignment:
| Q |
31 |
gaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
130 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607215 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
28607116 |
T |
|
| Q |
131 |
ggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607115 |
ggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgt |
28607016 |
T |
|
| Q |
231 |
gagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccac |
330 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |
|
|
| T |
28607015 |
gag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggtttttcac |
28606918 |
T |
|
| Q |
331 |
gttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcg |
427 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606917 |
gttaaatattggtgttaattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttggaattttaatttacacttgcgttaagctcg |
28606818 |
T |
|
| Q |
428 |
tcgagcccaacaa |
440 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28606817 |
tcgagcccaacaa |
28606805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 60 - 439
Target Start/End: Original strand, 44161571 - 44161949
Alignment:
| Q |
60 |
tgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt |
159 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161571 |
tgtgtgtagaggtgtgtgagaggaataatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt |
44161670 |
T |
|
| Q |
160 |
gctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatat |
259 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
44161671 |
gctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgtatctcttgtgtgtgt--aagagagtggagaga--attgtaatat |
44161766 |
T |
|
| Q |
260 |
tctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca---nnnnnnnn |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161767 |
tctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcattttttttatc |
44161866 |
T |
|
| Q |
357 |
gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
439 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161867 |
gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
44161949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 11104397 - 11104829
Alignment:
| Q |
1 |
aagctcaaagaaaagacaa-gcttcatcaatgaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgag |
99 |
Q |
| |
|
|||||||||||||| |||| |||||| || |||||||||||| ||| || ||| ||||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
11104397 |
aagctcaaagaaaatacaaagcttcaacattgaagcagaagtcaaa-tacaaagcttctatgtg--tagaagtgtgtgagagaaaaaatagagtgttgag |
11104493 |
T |
|
| Q |
100 |
taaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacg |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| ||||||||| |
|
|
| T |
11104494 |
taaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacg |
11104593 |
T |
|
| Q |
200 |
ggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtg |
299 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
11104594 |
ggaaacactatattgtatctctt---tgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtg |
11104690 |
T |
|
| Q |
300 |
gtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttgga |
399 |
Q |
| |
|
|| || ||||| ||||||||| ||||| | |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11104691 |
gt-ttaccctcgatattagaggattttctatgttaaatattggtgttcatttttatcgctacagctgcgctgcaagatccaatctcttttggattttgga |
11104789 |
T |
|
| Q |
400 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104790 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
11104829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 137 - 440
Target Start/End: Complemental strand, 48827000 - 48826701
Alignment:
| Q |
137 |
tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgt--aaga |
48826903 |
T |
|
| Q |
237 |
gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaa |
336 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| |||||||||||||| |
|
|
| T |
48826902 |
gagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaa |
48826804 |
T |
|
| Q |
337 |
tattggtgttc-annnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagccc |
435 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
48826803 |
tattggtgttctttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgatccc |
48826706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 412
Target Start/End: Complemental strand, 48708256 - 48708086
Alignment:
| Q |
242 |
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg |
341 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||| |||| || ||||||| || ||||| || ||||||||||| |
|
|
| T |
48708256 |
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg |
48708157 |
T |
|
| Q |
342 |
gtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttaca |
412 |
Q |
| |
|
|| || | || ||| ||| | || ||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
48708156 |
gtatttaattttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca |
48708086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 327
Target Start/End: Complemental strand, 24726442 - 24726288
Alignment:
| Q |
168 |
ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat |
267 |
Q |
| |
|
|||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| ||| || ||||| ||||||||||||| | || ||||||||| |
|
|
| T |
24726442 |
ataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctcgtgtcggta----agagaatggagagaatattattatgttctttaat |
24726348 |
T |
|
| Q |
268 |
atagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc |
327 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||| ||||||| ||||||| ||||||| |
|
|
| T |
24726347 |
ataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 439
Target Start/End: Complemental strand, 37040836 - 37040426
Alignment:
| Q |
30 |
tgaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
129 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37040836 |
tgaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacatc |
37040737 |
T |
|
| Q |
130 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37040736 |
gggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgtatctcttgtgtgtg |
37040637 |
T |
|
| Q |
230 |
tgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttcca |
329 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
37040636 |
tgag--agagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttcca |
37040539 |
T |
|
| Q |
330 |
cgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctc |
426 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040538 |
cgttaaatattggtgttcattttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttggaattttaatttacacttgcgttaagctc |
37040439 |
T |
|
| Q |
427 |
gtcgagcccaaca |
439 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37040438 |
gtcgagcccaaca |
37040426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 33 - 443
Target Start/End: Original strand, 15290195 - 15290598
Alignment:
| Q |
33 |
agcagaagtgaaaatataaaa---cttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
129 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
15290195 |
agcagaagtgaaaatacaaaaaagcttctgtgtgt--agaagtgtgtgaga------atagagtgttgactaaatccagaaagtgtgg-aaaaatacacc |
15290285 |
T |
|
| Q |
130 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15290286 |
gggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaataggagtgggtctcacgg-aaacactatattgtatctcttgtgtgtg |
15290382 |
T |
|
| Q |
230 |
tgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttcca |
329 |
Q |
| |
|
| |||| |||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||| | | |||| |||||||||||||||||| |
|
|
| T |
15290383 |
taagag--agtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggtattagagggttttcca |
15290480 |
T |
|
| Q |
330 |
cgttaaatattggtgttca---nnnnnnnngctaccgctgtgctgcaagatccaatctc-ttttggattttggaattttaatttacacttgcgttaagct |
425 |
Q |
| |
|
||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
15290481 |
cgttaaatattggtgttcattttttttatcgctaaggctgcgctgcaagatccaatctctttttggattttgaaattttaatttacaattgcgttaagct |
15290580 |
T |
|
| Q |
426 |
cgtcgagcccaacaagtg |
443 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15290581 |
cgtcgagcccaacaagtg |
15290598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 60 - 439
Target Start/End: Original strand, 12098988 - 12099361
Alignment:
| Q |
60 |
tgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggt |
159 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||| ||||| | | | |||||| | | ||| |||||||||||||||||| ||||| |
|
|
| T |
12098988 |
tgtgtgtagaagtatgtgaaaggaaaaatagagtgttgagtaaattcagag--tctcg--aaaatagattgagtgagtatcatctctataacttttaggt |
12099083 |
T |
|
| Q |
160 |
gctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatat |
259 |
Q |
| |
|
| ||||| |||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||||||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
12099084 |
gttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag--agtggagagaatattgtaatat |
12099181 |
T |
|
| Q |
260 |
tctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnngct |
359 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| |||| ||||| || ||||||||||||| ||||| |||||||| | |||| ||| |
|
|
| T |
12099182 |
tctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaaatattgcttttcatttttatcgct |
12099281 |
T |
|
| Q |
360 |
accgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
439 |
Q |
| |
|
| || || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
12099282 |
atcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcgagcccaaca |
12099361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 62 - 291
Target Start/End: Original strand, 12082002 - 12082227
Alignment:
| Q |
62 |
tgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgc |
161 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| ||||||||||| | | |||||||||| | ||||| ||||| |||||||||||||||||| || |
|
|
| T |
12082002 |
tgtgtagaagtgtgtgatcagaaaattagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgc |
12082100 |
T |
|
| Q |
162 |
tataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattc |
261 |
Q |
| |
|
||||| |||||| |||| |||||| || |||||| |||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||| |
|
|
| T |
12082101 |
tataaaataataacatttgaataggagcgagtctcattagaaacactatattgtatctcttttccgtgt--aagagagtggagaaaatattgtaatattc |
12082198 |
T |
|
| Q |
262 |
tttaatatagtggaatatttttcggagttt |
291 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
12082199 |
-ttaatatagtggaatattttttggagttt |
12082227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
| Q |
202 |
aaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt |
282 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||| || |||||| || |||||||||||||||||| |
|
|
| T |
2757448 |
aaacactatattgtatctcttgagtgtg--aaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt |
2757370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 15302900 - 15302960
Alignment:
| Q |
31 |
gaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaataga |
91 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15302900 |
gaagcagaattgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagagcaaaaataga |
15302960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 439
Target Start/End: Original strand, 12084669 - 12084751
Alignment:
| Q |
357 |
gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
439 |
Q |
| |
|
||||||| || ||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| |||||||||| |
|
|
| T |
12084669 |
gctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca |
12084751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 2757273 - 2757209
Alignment:
| Q |
379 |
caatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtg |
443 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||||||||| || | ||||||||| |
|
|
| T |
2757273 |
caatttcttttgaattttggaattttaatttacacttgtaataagctcgttgaacacaacaagtg |
2757209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 31 - 440
Target Start/End: Complemental strand, 42911399 - 42910992
Alignment:
| Q |
31 |
gaagcagaagtgaaaat-ataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacacc |
129 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42911399 |
gaagcagaagtgaaaaacacaaagcttctgtgtgtgtagaagtgtgtgagagaaaaaatagagtgttgagtaaatccagagagtgtggaaaaaatacact |
42911300 |
T |
|
| Q |
130 |
gggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
42911299 |
gggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatcttttgtgtgtg |
42911200 |
T |
|
| Q |
230 |
tgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttcca |
329 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
42911199 |
tgag--agagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtattagagggttttcca |
42911103 |
T |
|
| Q |
330 |
cgttaaatattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtc |
429 |
Q |
| |
|
|||||||||||||||||| | | |||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
42911102 |
tgttaaatattggtgttcatttttatcgttgccgctgcgctgcaagatctaatctcttttggattttaaaattttaatttccacttgcgttaagctcgtc |
42911003 |
T |
|
| Q |
430 |
gagcccaacaa |
440 |
Q |
| |
|
||||||||||| |
|
|
| T |
42911002 |
gagcccaacaa |
42910992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 31 - 439
Target Start/End: Complemental strand, 29107282 - 29106878
Alignment:
| Q |
31 |
gaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
130 |
Q |
| |
|
|||||||||||| ||||| ||| ||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29107282 |
gaagcagaagtggaaatacaaagcttctctgtatgtagaagtgtgtgagagaaaaaatag--tgttgagtaaatccagagagtgtgggaaaaatacattg |
29107185 |
T |
|
| Q |
131 |
ggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtg |
229 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29107184 |
ggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttgtatctcttgtgtgtg |
29107086 |
T |
|
| Q |
230 |
tgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttcca |
329 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
29107085 |
taagagag--tggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttcca |
29106988 |
T |
|
| Q |
330 |
cgttaaatattggtgttcannnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtc |
429 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
29106987 |
cgttaaatattggtgttcatttttaacgctaccgctgcgctgcaagatccaatcttttttggattttggaattttaatttacacttgcattaagctcctc |
29106888 |
T |
|
| Q |
430 |
gagcccaaca |
439 |
Q |
| |
|
|| ||||||| |
|
|
| T |
29106887 |
gatcccaaca |
29106878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 443
Target Start/End: Complemental strand, 38994779 - 38994695
Alignment:
| Q |
359 |
taccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtg |
443 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| |||||||||||||||||||||| || ||||| ||||| ||||||||||||| |
|
|
| T |
38994779 |
taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaagtg |
38994695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 347
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
| Q |
257 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttc |
347 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| || |||| || ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc |
38997230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 38997193 - 38997135
Alignment:
| Q |
384 |
tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagt |
442 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||| | |||| |||||||||| |
|
|
| T |
38997193 |
tcttttggattctggaattttaatttacacccgcattaagcccttcgaacccaacaagt |
38997135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 31 - 440
Target Start/End: Original strand, 8539139 - 8539549
Alignment:
| Q |
31 |
gaagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccg |
130 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
8539139 |
gaagcagaagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgagaggaaaaatatagtgttcagtaaattcagagagtgtgggaaaaatacatcg |
8539238 |
T |
|
| Q |
131 |
ggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacact---atattgtatctcttgtgtg |
227 |
Q |
| |
|
| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
8539239 |
gatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcac-ggaaacactataatattgtatctcttgtgtg |
8539337 |
T |
|
| Q |
228 |
tgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc |
327 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
8539338 |
tgt--aagagagtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcggtattagagggttttc |
8539435 |
T |
|
| Q |
328 |
cacgttaaatattggtgttca-nnnnnnnngctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctc |
426 |
Q |
| |
|
|||||||||||||| |||||| | |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
8539436 |
cacgttaaatattgatgttcattttttattgttaccgctgcgctgcaagatccaatctcttttagaatttggaattttaatttacacttgcgttaagctc |
8539535 |
T |
|
| Q |
427 |
gtcgagcccaacaa |
440 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8539536 |
gtcgagcccaacaa |
8539549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 51302118 - 51302306
Alignment:
| Q |
32 |
aagcagaagtgaaaatataaaacttctgtgtgtgtagaagtgtgtgagaggaaaaatagagtgttgagtaaatccagagagtgtgggaaaaatacaccgg |
131 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51302118 |
aagcataagtgaaaatacaaagcttctgtgtgtgtagaagtgtgtgtgaggaaaaatagagtattgagtaaatccagagagtgtggataaaatacaccgg |
51302217 |
T |
|
| Q |
132 |
gtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctc |
220 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
51302218 |
gtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatctc |
51302306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 51302937 - 51303023
Alignment:
| Q |
357 |
gctaccgctgtgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtg |
443 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
51302937 |
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaagtg |
51303023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
| Q |
312 |
gtattagagggttttccacgttaaatattggtgttca |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302308 |
gtattagagggttttccacgttaaatattggtgttca |
51302344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 257 - 439
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
| Q |
257 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttcannnnnnnn |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| || |||| |||| ||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttcaattttatc |
2100283 |
T |
|
| Q |
357 |
gctaccgctgtgctgcaaga-tccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
439 |
Q |
| |
|
|| || |||||||||| | || |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2100282 |
attatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca |
2100199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
| Q |
214 |
gtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattcttt |
264 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2100771 |
gtatctcttgtgtatgtaagagag--tggagagaatattgtaatattcttt |
2100723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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