View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20260_low_3 (Length: 458)

Name: NF20260_low_3
Description: NF20260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20260_low_3
NF20260_low_3
[»] chr1 (7 HSPs)
chr1 (4-304)||(37237892-37238191)
chr1 (172-242)||(37237080-37237149)
chr1 (168-206)||(36424325-36424363)
chr1 (394-444)||(37237772-37237822)
chr1 (170-203)||(51661540-51661573)
chr1 (7-71)||(20615025-20615089)
chr1 (171-227)||(14446727-14446783)
[»] chr7 (3 HSPs)
chr7 (170-242)||(24420069-24420141)
chr7 (167-199)||(32779850-32779882)
chr7 (170-216)||(11702262-11702307)
[»] chr5 (3 HSPs)
chr5 (167-242)||(22696513-22696588)
chr5 (176-242)||(27554174-27554240)
chr5 (170-199)||(2165928-2165957)
[»] chr4 (2 HSPs)
chr4 (168-201)||(51743883-51743916)
chr4 (167-206)||(16499111-16499150)
[»] chr2 (5 HSPs)
chr2 (167-216)||(44553230-44553279)
chr2 (169-199)||(18901374-18901404)
chr2 (166-198)||(24925250-24925282)
chr2 (174-206)||(25331920-25331952)
chr2 (166-198)||(25675685-25675717)
[»] chr6 (1 HSPs)
chr6 (170-216)||(19750157-19750203)
[»] scaffold0130 (1 HSPs)
scaffold0130 (167-199)||(25261-25293)
[»] chr3 (1 HSPs)
chr3 (167-199)||(18192480-18192512)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 4 - 304
Target Start/End: Complemental strand, 37238191 - 37237892
Alignment:
Q  4 agagacatgtacattgacgatattgattgtaactacaatgttaaccctgagcttcttttggatttggaaagagatacaacattccctacatttaaaccca 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37238191 agagacatgtacattgacgatattgattggaactacaatgttaaccctgagcttcttttggatttggaaagagatacaacattccctacatttaaaccca 37238092  T
Q  104 cactttgcggatgcgatattatttttaattgaattataaatgtacaagtaaagttggatttgttatgaggaatgctagggtcacaccctctaacactctc 203  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37238091 cactttgcggttgcgatattatttttaattgaattataaatgtataagtaaagttggatttgttataaggaatgctagggtcacaccctctaacactctc 37237992  T
Q  204 tttggacacactctcatctattggagccaactcatcactcannnnnnnnnnnnnnnacttgtaactgattctccaagtggagagagaaaccagttcaaga 303  Q
    |||||||||||||||||||||||||||||||||||| ||||               ||||||||| | ||||||||||||||||||||||||||||||||    
T  37237991 tttggacacactctcatctattggagccaactcatcgctca-ttttttctttttttacttgtaaccggttctccaagtggagagagaaaccagttcaaga 37237893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 37237080 - 37237149
Alignment:
Q  172 ggaatgctagggtcacaccctctaacactctctttggacacactctcatctattggagccaactcatcact 242  Q
    |||||| ||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  37237080 ggaatgttagggtcacaccctctaacgctctttttg-acacactctcatctattggagccaactcatcact 37237149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 36424325 - 36424363
Alignment:
Q  168 atgaggaatgctagggtcacaccctctaacactctcttt 206  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36424325 atgaggaatgctagggtcacaccctctaacactctcttt 36424363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 444
Target Start/End: Complemental strand, 37237822 - 37237772
Alignment:
Q  394 acgctcgactctcaatatcgtccttcccttcaatgcttttatgtaatttct 444  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||    
T  37237822 acgctcgcctctcaatctcgtccctcccttcaatgcttttatgtaatttct 37237772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 51661540 - 51661573
Alignment:
Q  170 gaggaatgctagggtcacaccctctaacactctc 203  Q
    ||||||||||||||||||||||||||||||||||    
T  51661540 gaggaatgctagggtcacaccctctaacactctc 51661573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 20615089 - 20615025
Alignment:
Q  7 gacatgtacattgacgatattgattgtaactacaatgttaaccctgagcttcttttggatttgga 71  Q
    ||||||||||||||||||||||| || || | || |||| |||||||||||||| |||| |||||    
T  20615089 gacatgtacattgacgatattgactggaattccagtgttgaccctgagcttcttctggacttgga 20615025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 14446727 - 14446783
Alignment:
Q  171 aggaatgctagggtcacaccctctaacactctctttggacacactctcatctattgg 227  Q
    |||||||||||||| ||||||| |||||| ||| ||  |||||||| ||||||||||    
T  14446727 aggaatgctagggtgacaccctttaacacactccttaaacacactcccatctattgg 14446783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 24420069 - 24420141
Alignment:
Q  170 gaggaatgctagggtcacaccctctaacactctctttggacacactctcatctattggagccaactcatcact 242  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  24420069 gaggaatgctagggtcacaccctctaacacactctttggacacactctcttctattggagccacctcatcact 24420141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 32779882 - 32779850
Alignment:
Q  167 tatgaggaatgctagggtcacaccctctaacac 199  Q
    |||||||||||||||||||||||||||||||||    
T  32779882 tatgaggaatgctagggtcacaccctctaacac 32779850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 11702262 - 11702307
Alignment:
Q  170 gaggaatgctagggtcacaccctctaacactctctttggacacactc 216  Q
    |||||||||||||| ||||||||||||||| |||||| |||||||||    
T  11702262 gaggaatgctagggacacaccctctaacacactcttt-gacacactc 11702307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 22696513 - 22696588
Alignment:
Q  167 tatgaggaatgctagggtcacaccctctaacactctctttggacacactctcatctattggagccaactcatcact 242  Q
    |||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||  ||||||||    
T  22696513 tatgagaaatgctagagtcacaccctctaacattctcttcggacacactctcatctattgaagccacatcatcact 22696588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 27554240 - 27554174
Alignment:
Q  176 tgctagggtcacaccctctaacactctctttggacacactctcatctattggagccaactcatcact 242  Q
    |||||||| || |||||||||||| |||| | ||||||||||| ||||||||||||| |||||||||    
T  27554240 tgctagggacataccctctaacacactctctagacacactctcgtctattggagccatctcatcact 27554174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 199
Target Start/End: Original strand, 2165928 - 2165957
Alignment:
Q  170 gaggaatgctagggtcacaccctctaacac 199  Q
    ||||||||||||||||||||||||||||||    
T  2165928 gaggaatgctagggtcacaccctctaacac 2165957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 51743883 - 51743916
Alignment:
Q  168 atgaggaatgctagggtcacaccctctaacactc 201  Q
    ||||||||||||||||||||||||||||||||||    
T  51743883 atgaggaatgctagggtcacaccctctaacactc 51743916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 16499111 - 16499150
Alignment:
Q  167 tatgaggaatgctagggtcacaccctctaacactctcttt 206  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  16499111 tatgagaaatgctagggtcacacccactaacactctcttt 16499150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 44553230 - 44553279
Alignment:
Q  167 tatgaggaatgctagggtcacaccctctaacactctctttggacacactc 216  Q
    |||||||||||||| |||||||| ||||||||| |||||| |||||||||    
T  44553230 tatgaggaatgctatggtcacactctctaacacactcttttgacacactc 44553279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 199
Target Start/End: Complemental strand, 18901404 - 18901374
Alignment:
Q  169 tgaggaatgctagggtcacaccctctaacac 199  Q
    |||||||||||||||||||||||||||||||    
T  18901404 tgaggaatgctagggtcacaccctctaacac 18901374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 24925250 - 24925282
Alignment:
Q  166 ttatgaggaatgctagggtcacaccctctaaca 198  Q
    ||||||| |||||||||||||||||||||||||    
T  24925250 ttatgagaaatgctagggtcacaccctctaaca 24925282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 25331920 - 25331952
Alignment:
Q  174 aatgctagggtcacaccctctaacactctcttt 206  Q
    |||||||||||||||||| ||||||||||||||    
T  25331920 aatgctagggtcacacccactaacactctcttt 25331952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 25675685 - 25675717
Alignment:
Q  166 ttatgaggaatgctagggtcacaccctctaaca 198  Q
    ||||||| |||||||||||||||||||||||||    
T  25675685 ttatgagaaatgctagggtcacaccctctaaca 25675717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 19750203 - 19750157
Alignment:
Q  170 gaggaatgctagggtcacaccctctaacactctctttggacacactc 216  Q
    ||||||||||| |||||||| ||||||||| |||||| |||||||||    
T  19750203 gaggaatgctatggtcacactctctaacacactcttttgacacactc 19750157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 25293 - 25261
Alignment:
Q  167 tatgaggaatgctagggtcacaccctctaacac 199  Q
    ||||| |||||||||||||||||||||||||||    
T  25293 tatgaagaatgctagggtcacaccctctaacac 25261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 18192512 - 18192480
Alignment:
Q  167 tatgaggaatgctagggtcacaccctctaacac 199  Q
    |||||||||||||||||||| ||||||||||||    
T  18192512 tatgaggaatgctagggtcataccctctaacac 18192480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University