View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20260_low_5 (Length: 364)
Name: NF20260_low_5
Description: NF20260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20260_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 12930705 - 12931045
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12930705 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaa |
12930804 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930805 |
acactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
12930902 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12930903 |
ttccctcggtattagagggttttccacgttaaatattggtgttca--tttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttgga |
12931000 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaacaagtgg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931001 |
attttaatttacacttgcgttaagctcgtcgagcccaacaagtgg |
12931045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 12935451 - 12935786
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
12935451 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaa |
12935550 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935551 |
acactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
12935648 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
12935649 |
ttccctcggtattagagggttttccacgttaaatattggtgttca--tttttttatcgctaccgctgcgctgcaagatccagtttcttttgaattttgga |
12935746 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935747 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
12935786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 26505063 - 26504945
Alignment:
| Q |
123 |
tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttt |
222 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | |||| |||| ||| | ||||||| ||| | |
|
|
| T |
26505063 |
tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtgg-ttttgccttgttattagacggtat |
26504965 |
T |
|
| Q |
223 |
tccacgttaaatattggtgtt |
243 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
26504964 |
t-cacgttaaatattgatgtt |
26504945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
| Q |
133 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaa |
232 |
Q |
| |
|
|||||||||| ||| |||||||||| ||| ||| |||| ||||||||| ||||||||| | || |||||| ||| || ||||||||||| || ||| |
|
|
| T |
15588948 |
agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa |
15589047 |
T |
|
| Q |
233 |
atattggtgttca |
245 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
15589048 |
atattgatgttca |
15589060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 26504895 - 26504850
Alignment:
| Q |
287 |
ttttggattttggaattttaatttacacttgcgttaagctcgtcga |
332 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||| |||||||| |
|
|
| T |
26504895 |
ttttggattttgaaattttaatttacacttccattaaactcgtcga |
26504850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 14173966 - 14174307
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173966 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaa |
14174065 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174066 |
acactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
14174163 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14174164 |
ttccctcggtattagagggttttccacgttaaatattggtgttc-attttttttatcactaccgctgcgctgcaagatccagtctcttttggattttgga |
14174262 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaacaagtgg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174263 |
attttaatttacacttgcgttaagctcgtcgagcccaacaagtgg |
14174307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 28611904 - 28611563
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611904 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaa |
28611805 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611804 |
acactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
28611707 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28611706 |
ttccctcggtattagagggtttttcacgttaaatattggtgttc-attttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttgga |
28611608 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaacaagtgg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611607 |
attttaatttacacttgcgttaagctcgtcgagcccaacaagtgg |
28611563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 14178720 - 14179057
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178720 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaa |
14178819 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178820 |
acactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
14178917 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14178918 |
ttccctcggtattagagggttttccacgttaaatattggtgttc-attttttttattgctaccgctgcgctgcaagatccagtctcttttggattttgga |
14179016 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaacaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14179017 |
attttaatttacacttgcgttaagctcgtcgagcccaacaa |
14179057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 28607142 - 28606805
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607142 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaa |
28607043 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607042 |
acactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
28606945 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28606944 |
ttccctcggtattagagggtttttcacgttaaatattggtgtt-aattttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttgga |
28606846 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaacaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606845 |
attttaatttacacttgcgttaagctcgtcgagcccaacaa |
28606805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 44161615 - 44161949
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44161615 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaa |
44161714 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161715 |
acactatattgtatctcttgtgtgtgt--aagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
44161810 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161811 |
ttccctcggtattagagggttttccacgttaaatattggtgttc-attttttttatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
44161909 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161910 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
44161949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 11104498 - 11104829
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
11104498 |
tccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaa |
11104597 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |
|
|
| T |
11104598 |
acactatattgtatctctt---tgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtgg-tt |
11104693 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
| |||||| ||||||||| ||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104694 |
taccctcgatattagaggattttctatgttaaatattggtgttca----tttttatcgctacagctgcgctgcaagatccaatctcttttggattttgga |
11104789 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104790 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
11104829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 34 - 341
Target Start/End: Complemental strand, 48827000 - 48826701
Alignment:
| Q |
34 |
tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48827000 |
tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgt--aaga |
48826903 |
T |
|
| Q |
134 |
gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaa |
233 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48826902 |
gagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaa |
48826804 |
T |
|
| Q |
234 |
tattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgag |
333 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
48826803 |
tattggtgttc---tttttctatcgctaccgctgcgctgcaagatccaatctc--ttgaattttgaaattttaatttacaattgcgttaagctcgtcgat |
48826709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 313
Target Start/End: Complemental strand, 48708256 - 48708086
Alignment:
| Q |
139 |
gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattg |
238 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |||||||||| ||||||||||| || |||||| || ||||| || ||||||||||| |
|
|
| T |
48708256 |
gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg |
48708157 |
T |
|
| Q |
239 |
gtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttaca |
313 |
Q |
| |
|
|| || || ||||| ||| ||||| || ||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
48708156 |
gtatttaa----ttttatcgccaccactgcgttgtaagattcaatttcttttatattttggaattttaatttaca |
48708086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 24726442 - 24726288
Alignment:
| Q |
65 |
ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat |
164 |
Q |
| |
|
|||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| ||| || ||||| ||||||||||||| | || ||||||||| |
|
|
| T |
24726442 |
ataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctcgtgtcggta----agagaatggagagaatattattatgttctttaat |
24726348 |
T |
|
| Q |
165 |
atagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttc |
224 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||| |||||||| | ||||||| ||||||| |
|
|
| T |
24726347 |
ataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc |
24726288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 34907168 - 34907503
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34907168 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaa |
34907267 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907268 |
acactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
34907365 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34907366 |
ttccctcggtattagagggttttccacgttaaatattggtgttca--tttttttatcgctaccgctgcgctgcaagatccagtctcttttggattttgga |
34907463 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907464 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
34907503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 37040762 - 37040426
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
37040762 |
tccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaa |
37040663 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040662 |
acactatattgtatctcttgtgtgtgtgag--agagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
37040565 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
37040564 |
ttccctcggtattagagggttttccacgttaaatattggtgttc-attttttttatcgctaccgctgcgctgcaagatccagtcttttttggattttgga |
37040466 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37040465 |
attttaatttacacttgcgttaagctcgtcgagcccaaca |
37040426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 15290261 - 15290599
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||| || |
|
|
| T |
15290261 |
tccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaataggagtgggtctcacgg-aa |
15290356 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
15290357 |
acactatattgtatctcttgtgtgtgtaagag--agtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggttt |
15290454 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctc-ttttggattttgg |
299 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15290455 |
atacctcggtattagagggttttccacgttaaatattggtgttc-attttttttatcgctaaggctgcgctgcaagatccaatctctttttggattttga |
15290553 |
T |
|
| Q |
300 |
aattttaatttacacttgcgttaagctcgtcgagcccaacaagtgg |
345 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15290554 |
aattttaatttacaattgcgttaagctcgtcgagcccaacaagtgg |
15290599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 33 - 340
Target Start/End: Original strand, 12099060 - 12099361
Alignment:
| Q |
33 |
gtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagag |
132 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||| |||| |||||| ||| ||||||| ||||||| ||||||| ||||||||| |||| |||| |
|
|
| T |
12099060 |
gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag |
12099159 |
T |
|
| Q |
133 |
agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaa |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| ||| ||||||||||||| ||||| || |
|
|
| T |
12099160 |
--agtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaa |
12099257 |
T |
|
| Q |
233 |
atattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcga |
332 |
Q |
| |
|
|||||| | |||| ||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
12099258 |
atattgcttttca----tttttatcgctatcggtgagctgcaagatcatatctcttttggattttggaattttaatttacactcgcgttaaactcgtcga |
12099353 |
T |
|
| Q |
333 |
gcccaaca |
340 |
Q |
| |
|
|||||||| |
|
|
| T |
12099354 |
gcccaaca |
12099361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 12082055 - 12082227
Alignment:
| Q |
13 |
gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt |
112 |
Q |
| |
|
|||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |||||| |||| |||||| || |||||| ||||||||||||||| |
|
|
| T |
12082055 |
gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgt |
12082154 |
T |
|
| Q |
113 |
atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagttt |
188 |
Q |
| |
|
||||||| | |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
12082155 |
atctcttttccgtgt--aagagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttggagttt |
12082227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 344
Target Start/End: Complemental strand, 2757448 - 2757209
Alignment:
| Q |
99 |
aaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggt |
198 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||| || |||||| || |||||||||||||| ||||| | |||||| | |||| |
|
|
| T |
2757448 |
aaacactatattgtatctcttgagtgtg--aaagagagtggagagaatagtgcaatatttttaaatatagtggaata-ttttcaaaatttgtctcatggt |
2757352 |
T |
|
| Q |
199 |
ttttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttg |
298 |
Q |
| |
|
|||||| | | |||| |||| ||| || ||||||||||||||| || |||| || ||| | ||||| || |||| ||||||| |||||| |
|
|
| T |
2757351 |
ttttccttaagcattaaaggggttttcatattaaatattggtgttaaa---tttttatcgttattgctacactgcataattcaatttcttttgaattttg |
2757255 |
T |
|
| Q |
299 |
gaattttaatttacacttgcgttaagctcgtcgagcccaacaagtg |
344 |
Q |
| |
|
||||||||||||||||||| ||||||||| || | ||||||||| |
|
|
| T |
2757254 |
gaattttaatttacacttgtaataagctcgttgaacacaacaagtg |
2757209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 12084666 - 12084751
Alignment:
| Q |
255 |
atcgctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
340 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||| |||||||||| |
|
|
| T |
12084666 |
atcgctaccgttgcgctacaagatccaatgtctattggattttgaaattttaatttaccctcgtgttaagctcgttgagcccaaca |
12084751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 29107211 - 29106878
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacggga |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107211 |
tccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacggga |
29107112 |
T |
|
| Q |
100 |
aacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtt |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107111 |
aacactat-ttgtatctcttgtgtgtgtaagagag--tggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtt |
29107015 |
T |
|
| Q |
200 |
tttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29107014 |
tttccctcggtattagagggttttccacgttaaatattggtgttca----tttttaacgctaccgctgcgctgcaagatccaatcttttttggattttgg |
29106919 |
T |
|
| Q |
300 |
aattttaatttacacttgcgttaagctcgtcgagcccaaca |
340 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
29106918 |
aattttaatttacacttgcattaagctcctcgatcccaaca |
29106878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 42911325 - 42910992
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42911325 |
tccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaa |
42911226 |
T |
|
| Q |
101 |
acactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggttt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42911225 |
acactatattgtatcttttgtgtgtgtgag--agagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggttt |
42911129 |
T |
|
| Q |
201 |
ttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||| | |||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
42911128 |
ttccctcggtattagagggttttccatgttaaatattggtgttca----tttttatcgttgccgctgcgctgcaagatctaatctcttttggattttaaa |
42911033 |
T |
|
| Q |
301 |
attttaatttacacttgcgttaagctcgtcgagcccaacaa |
341 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42911032 |
attttaatttccacttgcgttaagctcgtcgagcccaacaa |
42910992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
| Q |
154 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttc |
244 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| ||||||| ||| ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
38997320 |
tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc |
38997230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 38994779 - 38994694
Alignment:
| Q |
260 |
taccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtgg |
345 |
Q |
| |
|
||||||||| |||||||||||||| | ||||| |||||||||||||||||||||| || ||||| ||||| |||||||||||||| |
|
|
| T |
38994779 |
taccgctgcactgcaagatccaattttgtttgggttttggaattttaatttacactagcattaagatcgtcaagcccaacaagtgg |
38994694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 38997193 - 38997135
Alignment:
| Q |
285 |
tcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagt |
343 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||| | |||| |||||||||| |
|
|
| T |
38997193 |
tcttttggattctggaattttaatttacacccgcattaagcccttcgaacccaacaagt |
38997135 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 3 - 341
Target Start/End: Original strand, 8539214 - 8539549
Alignment:
| Q |
3 |
cagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaac |
102 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| |||||||||| |||| |
|
|
| T |
8539214 |
cagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacgg-aaac |
8539312 |
T |
|
| Q |
103 |
actata---ttgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtt |
199 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
8539313 |
actataatattgtatctcttgtgtgtgtaagag--agtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatt |
8539410 |
T |
|
| Q |
200 |
tttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnnnatcgctaccgctgcgctgcaagatccaatctcttttggattttgg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
8539411 |
tttccctcggtattagagggttttccacgttaaatattgatgttca---ttttttattgttaccgctgcgctgcaagatccaatctcttttagaatttgg |
8539507 |
T |
|
| Q |
300 |
aattttaatttacacttgcgttaagctcgtcgagcccaacaa |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8539508 |
aattttaatttacacttgcgttaagctcgtcgagcccaacaa |
8539549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 51302190 - 51302306
Alignment:
| Q |
1 |
tccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| ||||||||||||| |
|
|
| T |
51302190 |
tccagagagtgtggataaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaa |
51302289 |
T |
|
| Q |
101 |
acactatattgtatctc |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
51302290 |
acactatattgtatctc |
51302306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 258 - 345
Target Start/End: Original strand, 51302937 - 51303024
Alignment:
| Q |
258 |
gctaccgctgcgctgcaagatccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaacaagtgg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
51302937 |
gctaccgctgcgctgcaagatccaatctgttttggattttgaaattttaatttacacttgcattaagctcgtcgatcccaacaagtgg |
51303024 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 51302304 - 51302344
Alignment:
| Q |
205 |
ctcggtattagagggttttccacgttaaatattggtgttca |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302304 |
ctcggtattagagggttttccacgttaaatattggtgttca |
51302344 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 154 - 340
Target Start/End: Complemental strand, 2100379 - 2100199
Alignment:
| Q |
154 |
tattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttcaannnnnnn |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
2100379 |
tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttcaa----ttt |
2100287 |
T |
|
| Q |
254 |
natcgctaccgctgcgctgcaaga-tccaatctcttttggattttggaattttaatttacacttgcgttaagctcgtcgagcccaaca |
340 |
Q |
| |
|
||| || || || ||||||| | || |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2100286 |
tatcattatcgttgtgctgcaaaattcaaatctcttatgaattttggaattttaatttacacttgtgttaagctcgtcgagcccaaca |
2100199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
| Q |
111 |
gtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattcttt |
161 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2100771 |
gtatctcttgtgtatgtaagagag--tggagagaatattgtaatattcttt |
2100723 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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