View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20260_low_9 (Length: 287)
Name: NF20260_low_9
Description: NF20260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20260_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 327459 - 327711
Alignment:
| Q |
15 |
ggcaatggtgggactacgttactgactttgcaatccgatgtccaatgagagaaagtaaatacactgaagaatgctccgatcaagttattaaatctcttgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327459 |
ggcaatggtgggactacgttactgactttgcaatccgatgtccaatgagagaaagtaaatacactgaagaatgctccgatcaagttattaaatctcttgg |
327558 |
T |
|
| Q |
115 |
taggttggatactttcctctttcattgattgcacgcacgcactttgaccttgttctttggtggtgtctgattatgtctgaatttcttaacaaaacataac |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327559 |
taggttggatactttcctctttcatcgatt----gcacgcactttgacctttttctttggtggtgtctgattatgtctgaatttcttaacaaaacataac |
327654 |
T |
|
| Q |
215 |
atagttgttcgatcttaactgatttacttgatgtaggtgttaatttgaataagatta |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
327655 |
atagttgttcgatcttaactgatttacttgatgtaggtgttaatttgaataagatta |
327711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 27413227 - 27413122
Alignment:
| Q |
15 |
ggcaatggtgggactacgttactgactttgcaatccgatgtccaatgagagaaagtaaatacactgaagaatgctccgatcaagttattaaatctcttgg |
114 |
Q |
| |
|
||||||||||||| || || || |||||| ||||||| || || |||| ||| | |||||||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
27413227 |
ggcaatggtgggattatgtgaccgacttttcaatccgttgccccatgaaagagaaaaaatacacagaagaatgctcggatgaagttattaaatctcttgg |
27413128 |
T |
|
| Q |
115 |
taggtt |
120 |
Q |
| |
|
|||||| |
|
|
| T |
27413127 |
taggtt |
27413122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University