View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_12 (Length: 411)
Name: NF20261_high_12
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 32885749 - 32885369
Alignment:
| Q |
17 |
aatatcaaatcgagattcgactactatgtatcgtaagatactaataaccatgtaagtggattgtctaaatggccacat-aggttataaaattctggtata |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
32885749 |
aatatcaaatcgagattcgactactatgcatcgtaagatactaataaccatgtaagtgatttgtctaaatggccacattaggttataaaattctggtata |
32885650 |
T |
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| Q |
116 |
gactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttgttttacacaaaatcctcatgatgtgcaaattttattctaaatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32885649 |
gactaaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttgttttacacaaaatcctcatgatgtgcaaattttattctaaatat |
32885550 |
T |
|
| Q |
216 |
ttggatggacacctctactacatttccatctaaagttacatgctatattcaacattcttctaagcctccttctccatttttgtactgcaatttaactttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32885549 |
ttggatggacacctctactacatttccatctaaaattacatgctatattcaacattcttctaagcctccttctccatttttgtactgcaatttaactttg |
32885450 |
T |
|
| Q |
316 |
gtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacctatg |
396 |
Q |
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| T |
32885449 |
gtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacctatg |
32885369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 32896506 - 32896343
Alignment:
| Q |
24 |
aatcgagattcgactactatgtatcgtaagatactaataaccatgtaagt----ggatt-gtctaaatggccacataggttataaaattctggtatagac |
118 |
Q |
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| T |
32896506 |
aatcgagatacgactaatatgtctcatacgatactgataaccatgtaatttaatggatttgtctaaatggccacctaggttgtataattctggtctagac |
32896407 |
T |
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| Q |
119 |
taaatttttgtcttgtaaaactagtagctgaaaacaaactttgtgaagccttgttttacacaaa |
182 |
Q |
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|||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| |
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| T |
32896406 |
taaacttttgtcttgtaaaacaggtagcttaaaacaaactttatgaagccttgttttacacaaa |
32896343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 256 - 396
Target Start/End: Complemental strand, 32896229 - 32896089
Alignment:
| Q |
256 |
tgctatattcaacattcttctaagcctccttctccatttttgtactgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccaca |
355 |
Q |
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| T |
32896229 |
tgctatattctgcattcttctacgtctccgtctccactattgtactgccttttaactttggtcttgatatcaacatctttgtcaccttctttaccccaca |
32896130 |
T |
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| Q |
356 |
gcaacagatacaaacccatgatcacaataaatgcacctatg |
396 |
Q |
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| T |
32896129 |
gcaacaaatatagacccatgatgacaataaaaccacctatg |
32896089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 313 - 396
Target Start/End: Complemental strand, 32935838 - 32935755
Alignment:
| Q |
313 |
ttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacctatg |
396 |
Q |
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| T |
32935838 |
ttggtcttcaaatcaatctctttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacaataaatgcacctatg |
32935755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 311 - 395
Target Start/End: Complemental strand, 32953234 - 32953150
Alignment:
| Q |
311 |
ctttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacctat |
395 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| |
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| T |
32953234 |
ctttggtcttgaaatcgaccactttgtcaccttctttcccccacagcaacaaatacaaacccatgatgacgataaatgcacctat |
32953150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 299 - 392
Target Start/End: Original strand, 19503522 - 19503615
Alignment:
| Q |
299 |
actgcaatttaactttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacc |
392 |
Q |
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| T |
19503522 |
actgcaatttacctttggtcttgaaatcaacctctctgtcaccttctttcccccacagtaacaagtatagtcccatgatgacaataagtgcacc |
19503615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 396
Target Start/End: Complemental strand, 32919604 - 32919521
Alignment:
| Q |
313 |
ttggtcttgaaatcaacctctttgtcaccttctttcccccacagcaacagatacaaacccatgatcacaataaatgcacctatg |
396 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| | ||||| ||| |||||||| |||||||| |
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| T |
32919604 |
ttggtcttgaaatcaacatctttgtcaccttctttaccccacagcaacaaatatagacccacgatgacaataaaaccacctatg |
32919521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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