View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_16 (Length: 378)
Name: NF20261_high_16
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 45549861 - 45549533
Alignment:
| Q |
4 |
ctttgatctggatgggaaaagaggcaaatccaagaaataattatgttatttggaacggtggaggatgacatggcggtgggttggtggttcaaggtggtag |
103 |
Q |
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| T |
45549861 |
ctttgatctggatgggaagagaggcaaatccaagaaataattatgttatttggaacggtggaggaagacatggcggtgggttggtggttcaaggtggtag |
45549762 |
T |
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| Q |
104 |
tgcaaattaggtagagaaaaacttaagtggagggtaacctaatgaaccgtgatgaatcattttgaaaattgctaaaaaatctgcacatgaccacaacaca |
203 |
Q |
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| T |
45549761 |
tgcaaattaggtagagaaaaacttaagtggagggtaacctaatgaaccgtgatgaatcattttgaaaattgctaaaaaatctgcacatgaccacagcaca |
45549662 |
T |
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| Q |
204 |
ttctagtgttgagtggagggtaagctatctgaatagggtttatcacaaaattatatataatgcaaataatagaatttaccacaatcttga-tttaagtct |
302 |
Q |
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| T |
45549661 |
ttctagtgttgagtggaaggtaagctatctgaatagggtttatcacaaaattatatataatgcaaataatagaatttaccacaatcttgattttaagtct |
45549562 |
T |
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| Q |
303 |
taaccgtcaatttcaaacttaaaattaca |
331 |
Q |
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| T |
45549561 |
taaccgtcaatttcaaacttaaaattaca |
45549533 |
T |
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