View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_17 (Length: 375)
Name: NF20261_high_17
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_17 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0056 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 22983455 - 22983113
Alignment:
| Q |
1 |
tacaagccaatcatgttgaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatat |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22983455 |
tacaagccaatgatgttgaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatat |
22983356 |
T |
|
| Q |
101 |
gttggaggtaattgacataaaattgatcatgacatagttaacaaattgaaattcatttcattagtcaaaatccatttttgaaattaaaaataaagtgtca |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |
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| T |
22983355 |
gttggaggtaagagacataaaattgatcatgacatagttaacaaattgaaattcatttcattagttaaaatccatttttgaaataaaaaa-----tgtca |
22983261 |
T |
|
| Q |
201 |
tggagaaaaagttaaacataatttagtaacctcaaaatggttgaagactctagtaacaagttaaatagcaaaagaaaagcgactattttaacaaaaatga |
300 |
Q |
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||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |
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| T |
22983260 |
tggagaaaaggttgaacatactttagtaacctcaaaatggttgaagactctagtaacaagtcaaataacaaaagaaaagcgaatatttaaacaaaaatga |
22983161 |
T |
|
| Q |
301 |
caaaaaagttggctagacatacttgatactccctccataccattttaa |
348 |
Q |
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|||||||||||||||||||| ||||||||||||||| | ||||||||| |
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| T |
22983160 |
caaaaaagttggctagacatgcttgatactccctccgtcccattttaa |
22983113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 21250042 - 21250154
Alignment:
| Q |
1 |
tacaagccaatcatgttgaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatat |
100 |
Q |
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||||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21250042 |
tacaagccaatgaaatagaaggcctccaaataagaaaagatggacaatggattcctgttcaacccctccctaatgcttttgtcatcaacattggagatat |
21250141 |
T |
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| Q |
101 |
gttggaggtaatt |
113 |
Q |
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||||||||||||| |
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| T |
21250142 |
gttggaggtaatt |
21250154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 22933249 - 22933357
Alignment:
| Q |
3 |
caagccaatcatgttgaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatatgt |
102 |
Q |
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||||| ||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||| |||| |
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| T |
22933249 |
caagctaatgatattgaaggccttcaaataagaaaagatggacaatggattcctgttcaacccctccctaatgctttcgtcgtcaaccttggagacatgt |
22933348 |
T |
|
| Q |
103 |
tggaggtaa |
111 |
Q |
| |
|
||||||||| |
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| T |
22933349 |
tggaggtaa |
22933357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 21264282 - 21264377
Alignment:
| Q |
18 |
gaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatatgttggaggtaatt |
113 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||| |||| || | |||||||||||||| ||| |||||||||| || ||||||||| |
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| T |
21264282 |
gaaggtctccaaataagaaaagatggacaatgggtttctgttaaaccactgaccaatgcttttgtcataaacgttggagatattttcgaggtaatt |
21264377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22928627 - 22928738
Alignment:
| Q |
1 |
tacaagccaatcatgttgaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatat |
100 |
Q |
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|
||||||||||| | | ||||| ||||||||| ||||||||||||| |||||||||||| |||| ||| | ||||||||||||| ||| ||||||| || |
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| T |
22928627 |
tacaagccaatgacatcgaaggtctccaaatacgaaaagatggacagtggatttctgttaaaccactcaccgatgcttttgtcataaacgttggagacat |
22928726 |
T |
|
| Q |
101 |
gttggaggtaat |
112 |
Q |
| |
|
||||||||||| |
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| T |
22928727 |
tttggaggtaat |
22928738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 23022115 - 23022004
Alignment:
| Q |
1 |
tacaagccaatcatgttgaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatat |
100 |
Q |
| |
|
||||||||||| | ||||||| ||||||||| ||||||||||||| |||||||||||| |||| ||| | ||||||||||||| || ||||||| || |
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| T |
23022115 |
tacaagccaatgacattgaaggtctccaaatacgaaaagatggacagtggatttctgttaaaccactcaccgatgcttttgtcataaatgttggagacat |
23022016 |
T |
|
| Q |
101 |
gttggaggtaat |
112 |
Q |
| |
|
||||||||||| |
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| T |
23022015 |
tttggaggtaat |
23022004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 21350970 - 21351064
Alignment:
| Q |
18 |
gaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatatgttggaggtaat |
112 |
Q |
| |
|
|||||||| ||||| |||||||| ||| |||||| || | | |||||| || ||||||||||| ||||||||||||| |||||||||||||| |
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| T |
21350970 |
gaaggccttcaaatcagaaaagacggaatgtggattcctatcaagcccctctctgatgcttttgtcgtcaacattggagacatgttggaggtaat |
21351064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 21211939 - 21212032
Alignment:
| Q |
18 |
gaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatatgttggaggtaa |
111 |
Q |
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|
|||||||| ||||||| |||||||||| |||||| || || | || ||| | ||||||||||| |||||||||||||| ||| | ||||||| |
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| T |
21211939 |
gaaggccttcaaataaaaaaagatggaatgtggattcctattaagcctctcacaaatgcttttgttatcaacattggagacatgctagaggtaa |
21212032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 21320426 - 21320471
Alignment:
| Q |
66 |
ctccctaatgcttttgtcatcaacattggagatatgttggaggtaa |
111 |
Q |
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||||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
21320426 |
ctccctaatgcttttgtggtcaacattggagatttgttagaggtaa |
21320471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 23313 - 23204
Alignment:
| Q |
3 |
caagccaatcatgttgaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatatgt |
102 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||| | ||||||||||| |||| |
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| T |
23313 |
caagccaatgacattgaaggcctccaaataagaaaagatggacaatggatttctgttaaaccactcgccggtgcttttgtcgtaaacattggagacatgt |
23214 |
T |
|
| Q |
103 |
tggaggtaat |
112 |
Q |
| |
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| |||||||| |
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| T |
23213 |
tagaggtaat |
23204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 62437 - 62343
Alignment:
| Q |
16 |
ttgaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatatgttggaggta |
110 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||| || || | || ||| | ||||||||||| |||||||||||||| ||||| |||||| |
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| T |
62437 |
ttgaaggccttcaagtaagaaaagatggaatgtggattcctattaagccactctcaaatgcttttgtgatcaacattggagacatgttagaggta |
62343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 26914291 - 26914196
Alignment:
| Q |
18 |
gaaggcctccaaataagaaaagatggacaatggatttctgttcaacccctccctaatgcttttgtcatcaacattggagatatgttggaggtaatt |
113 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||| || || | || ||| | ||||||||||| |||||||||||||| ||| | ||||||||| |
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| T |
26914291 |
gaaggccttcaaataaaaaaagatggaatgtggattcctattaagcctctcacaaatgcttttgttatcaacattggagacatgctagaggtaatt |
26914196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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