View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_18 (Length: 371)
Name: NF20261_high_18
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 10244088 - 10244454
Alignment:
| Q |
18 |
catttgtactccaagttatgaataagaatgttgtgatttagcactttttaatttgtgttggttgacttaattggacacag--tatatatactctacttaa |
115 |
Q |
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| T |
10244088 |
catttgtactccaagttatgaataagaacgttgtgatttagcactttttaatttgtgttggttgactaaattggacatagtatatatatactctacttaa |
10244187 |
T |
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| Q |
116 |
tactctgtcatatcagtaaggtgcatgaaagttcaattttctgt------------gaaaaattaatttatgtttgaatctagaatttactaaacttcac |
203 |
Q |
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| T |
10244188 |
tactctgtcatatcagtaaggtgcatgaaagttcaattttctgtagtagacataacgaataattaatttatgtttgaatctagaatttactaaacttcac |
10244287 |
T |
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| Q |
204 |
gaacttggaatttcattgcattataacttg-----------gctttagtgaaaaatgattttggtgcttaaaattataagagttggagtttggacaaatt |
292 |
Q |
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| T |
10244288 |
gtacttggaatttcattgcattatagcttgactcagtagtagctttagtgaaaaatgattttggtgcttaaaattttaagagttggagtttggacaaatt |
10244387 |
T |
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| Q |
293 |
atacacactcatataatttagttatcttttcaaatttacaattacaattttcaaggttctatatctgtg |
361 |
Q |
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| T |
10244388 |
at--acactcatataatttagttatcttttcaaatttacaattacaattttcaaggttctatatttgtg |
10244454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 10218053 - 10218136
Alignment:
| Q |
18 |
catttgtactccaagttatgaataagaatgttgtgatttagcactttttaatttgtgttggttgacttaattggacacagtata |
101 |
Q |
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| T |
10218053 |
catttgtacttcaaattatgaataagaacgttatgatttagtacttcttattttgtgtttgttgactaaatttgacagagtata |
10218136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 10218206 - 10218262
Alignment:
| Q |
164 |
aattaatttatgtttgaatctagaatttactaaacttcacgaacttggaatttcattg |
221 |
Q |
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| T |
10218206 |
aattaattaatgtttgaatctcgaatttactaaa-ttaacgaacttgtaatttcattg |
10218262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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