View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20261_high_19 (Length: 370)
Name: NF20261_high_19
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 49642615 - 49642974
Alignment:
| Q |
1 |
tcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49642615 |
tcatcactatcttcctcctcctcttgaatccaaccaaatccgaagaaaataaaaaccttaaatcaacaacaacagaaaatgagtgcgaacaacgttggat |
49642714 |
T |
|
| Q |
101 |
ccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaaccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49642715 |
ccacataagaaaattaccaccaaaattcaacctagatctactctcaaattgttcagaatacacattcctagacgatttatgtccttacttagcaaaccat |
49642814 |
T |
|
| Q |
201 |
ggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgagctcattttccatcgtcgtatgttagaatatccat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49642815 |
ggtttgggtcaaaaaacccataaccgttcccatagttggtaccgaaccgacccatccatgcttgaactcattttccatcgtcgtatgttagaatatccat |
49642914 |
T |
|
| Q |
301 |
gcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctttg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49642915 |
gcttaacggaagatcctaaaaccgctaacgccgtttatcttccttactacgctgcctttg |
49642974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University