View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_20 (Length: 369)
Name: NF20261_high_20
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 27 - 369
Target Start/End: Complemental strand, 30708163 - 30707820
Alignment:
| Q |
27 |
gcagcatttcatgtcaattgcaaattcttaagatggtgcattcttattgtatccagtctaaaattttgtttgaattcttggcacataataaattaatgaa |
126 |
Q |
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| T |
30708163 |
gcagcatttcatgtcaattgcaaattcttaagatgttgcattcttattgtatccagtctaaaattttgtttgaattcttggcacataataaattaatgaa |
30708064 |
T |
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| Q |
127 |
agggggttaagatcaacagctcaatagtagaatcatcttcaatggtaactgtttcaaatttgtttttcagttgatataatgtttcactttgttcaggggc |
226 |
Q |
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| T |
30708063 |
agggggttaagatcaacagctcaatagtagaatcatcttcaatggtaactgtttcaaatttgtttttcagttgatataatgtttcactttgttcaggggc |
30707964 |
T |
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| Q |
227 |
atctttgatcaaaagcagaagtatgtaacttgtgaatgtgtgagtcacactcaagaataataaaacaa-aaaatatgctccattgttgtcttttgttttt |
325 |
Q |
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| T |
30707963 |
atctttgatcaaaagcagaagtatgtaacttgtgaatgtgtgagtcacattcaagaataataaaacaaaaaaatatgcttcattgttgtcttttgttttt |
30707864 |
T |
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| Q |
326 |
cgtgaattgcttcattattctgtttcttgttaactaaagatacc |
369 |
Q |
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| T |
30707863 |
catgaattgcttcattattctgtttcttgttaactaaagatacc |
30707820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 30716925 - 30716854
Alignment:
| Q |
35 |
tcatgtcaattgcaaattcttaagatggtgcattcttattgtatccagtctaaaattttgtttgaattcttg |
106 |
Q |
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| T |
30716925 |
tcatgtcaattgcaaattcttaaaatgttccgttcttattggatcaagactaaaattttgtttgaattcttg |
30716854 |
T |
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