View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_23 (Length: 334)
Name: NF20261_high_23
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 29 - 331
Target Start/End: Complemental strand, 3480997 - 3480695
Alignment:
| Q |
29 |
accaataacatgtatttcgtcgtaggatttctacacttttgttccctctcaatgcttcccttcaaaatgaagccgtccttgtcattgttccaaccaatgc |
128 |
Q |
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| T |
3480997 |
accaataacatgtatttcgtcgtaggatttctacacttttgttccccctcaatgcttcccttcaaaatgaagccgtctttgtcattgttccaaccaatgc |
3480898 |
T |
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| Q |
129 |
catcagtatcttatgattcatgcaatttgcattttgattcgatacgaaatcagacacagttgatacatatcagagtgtgaatctctttttggcctctcag |
228 |
Q |
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| T |
3480897 |
catcagtatcttacaattcatgcaattcgcattttgattcgatacgaaatcaaacacagttgatacatatcagagtgtgaatctctttttggcctctcag |
3480798 |
T |
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| Q |
229 |
aatgaatcccaattcaatttgctgaatctcatggaattgagagttgtgaatctcgttgaatcgtatgatatgaattcagtcacgtacatgggtacatccc |
328 |
Q |
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| T |
3480797 |
aatgaatcccaattcaatttgctgaatctcatggaattgggagttgtgaatctcgttgaatcgtatgatatgaattcagtcatgttcatgggtacatccc |
3480698 |
T |
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| Q |
329 |
aga |
331 |
Q |
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| T |
3480697 |
aga |
3480695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 162 - 306
Target Start/End: Complemental strand, 3523843 - 3523698
Alignment:
| Q |
162 |
ttgattcgatacgaaatcagacacagttgatacatatcagagtgtgaatctctttttggcctctcagaatgaatcccaattcaatttgctgaatctcatg |
261 |
Q |
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|||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||| |
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| T |
3523843 |
ttgatttgatacgatatcaaacacaattgatacatatcagagtgtgaatctcttttggacttctcatcatgaatcccaattcaatttgctgaatctcatg |
3523744 |
T |
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| Q |
262 |
gaattgagagttgtgaatctc-gttgaatcgtatgatatgaattca |
306 |
Q |
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| T |
3523743 |
gagttgggagatgtgaatctcagttaaatcacatgatatgaattca |
3523698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 3535939 - 3535990
Alignment:
| Q |
50 |
gtaggatttctacacttttgttccctctcaatgcttcccttcaaaatgaagc |
101 |
Q |
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||||| |||||||| ||||||||||||||| ||||||||| ||||||||||| |
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| T |
3535939 |
gtagggtttctacatttttgttccctctcagtgcttccctgcaaaatgaagc |
3535990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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