View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_27 (Length: 306)
Name: NF20261_high_27
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 29603344 - 29603569
Alignment:
| Q |
15 |
cagagactagtgaactatgaagcaatgacatagacacgaacatcgaacacaacactaacgggaaaaaactaaggaacatatgaggcaggcagatttttgc |
114 |
Q |
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| T |
29603344 |
cagagactagtgaactatgaagcaatgacatagacacgaacatcgaacacaacactaacgggaaaaaactaaggaacatatgaggcaggcagatttttgc |
29603443 |
T |
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| Q |
115 |
tttctgacaactctaattgcaaatcaactattgtaaggatgggaagagttttatagaaaataaatgaaaccattaacttcaaacacaataaaagagaaat |
214 |
Q |
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| T |
29603444 |
tttctgacaactctaattgcaaatcaactattgtaaggatgggaagagttttatagaaaataaatgaaaccattaacttcaaacacaataaaagagaaat |
29603543 |
T |
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| Q |
215 |
cataaagtatgaaatgaaaaactcag |
240 |
Q |
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| T |
29603544 |
cataaagtatgaaatgaaaaactcag |
29603569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 8921077 - 8921118
Alignment:
| Q |
29 |
ctatgaagcaatgacatagacacgaacatcgaacacaacact |
70 |
Q |
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| T |
8921077 |
ctatgaaacaatgacatagacacgaacattaaacacaacact |
8921118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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