View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20261_high_3 (Length: 674)

Name: NF20261_high_3
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20261_high_3
NF20261_high_3
[»] chr3 (12 HSPs)
chr3 (19-302)||(37130256-37130535)
chr3 (373-656)||(37130256-37130535)
chr3 (20-271)||(37121693-37121933)
chr3 (404-655)||(37121693-37121933)
chr3 (304-348)||(26555477-26555521)
chr3 (327-371)||(26555477-26555521)
chr3 (306-348)||(2125267-2125309)
chr3 (327-369)||(2125267-2125309)
chr3 (327-369)||(28211746-28211788)
chr3 (306-348)||(28211746-28211788)
chr3 (304-348)||(22418554-22418598)
chr3 (327-371)||(22418554-22418598)
[»] chr1 (8 HSPs)
chr1 (327-370)||(18431715-18431758)
chr1 (305-348)||(18431715-18431758)
chr1 (327-371)||(22788462-22788506)
chr1 (304-348)||(22788462-22788506)
chr1 (304-348)||(33403425-33403469)
chr1 (327-371)||(33403425-33403469)
chr1 (304-348)||(37187912-37187956)
chr1 (327-371)||(37187912-37187956)
[»] chr6 (4 HSPs)
chr6 (327-369)||(5014173-5014215)
chr6 (306-348)||(5014173-5014215)
chr6 (304-348)||(16692963-16693007)
chr6 (327-371)||(16692963-16693007)
[»] chr2 (2 HSPs)
chr2 (327-371)||(16916446-16916490)
chr2 (304-348)||(16916446-16916490)
[»] chr7 (6 HSPs)
chr7 (309-346)||(46437312-46437349)
chr7 (329-366)||(46437312-46437349)
chr7 (306-348)||(38663006-38663048)
chr7 (327-369)||(38663006-38663048)
chr7 (304-348)||(28998021-28998065)
chr7 (327-371)||(28998021-28998065)
[»] chr8 (2 HSPs)
chr8 (304-348)||(28535194-28535238)
chr8 (327-371)||(28535194-28535238)
[»] chr5 (6 HSPs)
chr5 (327-369)||(424836-424878)
chr5 (306-348)||(424836-424878)
chr5 (327-369)||(18113838-18113880)
chr5 (306-348)||(18113838-18113880)
chr5 (327-369)||(25634446-25634488)
chr5 (306-348)||(25634446-25634488)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 37130256 - 37130535
Alignment:
Q  19 gatttagattggtcactgttccaaccatgggcttgggaggttaattggctcgtcgatggagtgcatgacaccagtaaaaggttgtcgttcaaaaaagaag 118  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| |||||||  |||||||||||||||||||||||||||    
T  37130256 gatttagattggtcattgttccaaccatcggcttgggaggttaattggctcgtggatggagtgtatgacacaggtaaaaggttgtcgttcaaaaaagaag 37130355  T
Q  119 aaaggaaccctcactaagaaaatggttcctttcttgattttcacttttgttcgtgagggaaaatgaaagttttctttcgcctcgaatgtccaaccttcta 218  Q
    |||||||||||| |||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||    ||||||||| ||||||||||||||||    
T  37130356 aaaggaaccctcgctaaaaaaatggtttctttattgattttcacttttgtacgtgagggaaaatgaaagt----tttcgcctcaaatgtccaaccttcta 37130451  T
Q  219 ttgaaaaccgcgagtagcgaagcatttgaaccacatatgttatctcctttattaataatgttgtgccaccacaggcacggacat 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||    
T  37130452 ttgaaaaccgcgagtagcgaagcatttgaaccacatatgttatctcctttattaatgatgttgtaccaccacagacatggacat 37130535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 373 - 656
Target Start/End: Complemental strand, 37130535 - 37130256
Alignment:
Q  373 atgtccgtgcctgtggtggcacaacattattaataaaggagataacatatgtggttcaaatgcttcgctactcgcggttttcaatagaaggttggacatt 472  Q
    |||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37130535 atgtccatgtctgtggtggtacaacatcattaataaaggagataacatatgtggttcaaatgcttcgctactcgcggttttcaatagaaggttggacatt 37130436  T
Q  473 cgaggcgaaagaaaactttcattttccctcacgaacaaaagtgaaaatcaagaaaggaaccattttcttagtgagggttcctttcttcttttttgaacga 572  Q
     |||||||||    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  37130435 tgaggcgaaa----actttcattttccctcacgtacaaaagtgaaaatcaataaagaaaccatttttttagcgagggttcctttcttcttttttgaacga 37130340  T
Q  573 caaccttttactggtgtcatgcactccatcgacgagccaattaacctcccaagcccatggttggaacagtgaccaatctaaatc 656  Q
    |||||||||||  ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  37130339 caaccttttacctgtgtcatacactccatccacgagccaattaacctcccaagccgatggttggaacaatgaccaatctaaatc 37130256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 37121693 - 37121933
Alignment:
Q  20 atttagattggtcactgttccaaccatgggcttgggaggttaattggctcgtcgatggagtgcatgacaccagtaaaaggttgtcgttcaaaaaagaaga 119  Q
    |||||||||| ||| ||||||||||||||| |||| ||||||||||||  ||  |||||||| |   ||| |||||| ||||  |||||||||| ||||     
T  37121693 atttagattgctcattgttccaaccatgggtttggaaggttaattggcctgtgaatggagtgtacagcactagtaaagggtttccgttcaaaaa-gaagc 37121791  T
Q  120 aaggaaccctcactaagaaaatggttcctttcttgattttcacttttgttcgtgagggaaaatgaaagttttctttcgcctcgaatgtccaaccttctat 219  Q
    ||||||||||| ||| |      ||||||||||||||||||||||||||  ||||| ||||||||||||||||     |||| |||  || ||||||| |    
T  37121792 aaggaaccctccctagg------gttcctttcttgattttcacttttgtatgtgagtgaaaatgaaagttttca----cctcaaattccctaccttcttt 37121881  T
Q  220 tgaaaaccgcgagtagcgaagcatttgaaccacatatgttatctcctttatt 271  Q
    ||||||||  ||||| || | | | ||||||||| |||||||||||||||||    
T  37121882 tgaaaaccatgagtaacgtaacgtgtgaaccacaaatgttatctcctttatt 37121933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 404 - 655
Target Start/End: Complemental strand, 37121933 - 37121693
Alignment:
Q  404 aataaaggagataacatatgtggttcaaatgcttcgctactcgcggttttcaatagaaggttggacattcgaggcgaaagaaaactttcattttccctca 503  Q
    ||||||||||||||||| ||||||||| | | | || |||||  ||||||||| ||||||| ||  ||| ||||     |||||||||||||||| ||||    
T  37121933 aataaaggagataacatttgtggttcacacgttacgttactcatggttttcaaaagaaggtagggaatttgagg----tgaaaactttcattttcactca 37121838  T
Q  504 cgaacaaaagtgaaaatcaagaaaggaaccattttcttagtgagggttcctttcttcttttttgaacgacaaccttttactggtgtcatgcactccatcg 603  Q
    |  ||||||||||||||||||||||||||      | ||| ||||||||||| |||| ||||||||||  |||| |||||| |||   | ||||||||      
T  37121837 catacaaaagtgaaaatcaagaaaggaac------cctagggagggttccttgcttc-tttttgaacggaaaccctttactagtgctgtacactccattc 37121745  T
Q  604 acgagccaattaacctcccaagcccatggttggaacagtgaccaatctaaat 655  Q
    ||  |||||||||||| |||| ||||||||||||||| ||| ||||||||||    
T  37121744 acaggccaattaaccttccaaacccatggttggaacaatgagcaatctaaat 37121693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 26555477 - 26555521
Alignment:
Q  304 aggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  26555477 aggggcggatggagtgtgaaacatggtgtggcagctgccacacca 26555521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 26555521 - 26555477
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 371  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  26555521 tggtgtggcagctgccacaccatgtttcacactccatccgcccct 26555477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 2125267 - 2125309
Alignment:
Q  306 gggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||  ||| ||||||||||||||||||||||||||||||    
T  2125267 gggcggagttagtgtgaaacatggtgtggcagctgccacacca 2125309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 2125309 - 2125267
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgccc 369  Q
    |||||||||||||||||||||||||||||| |||  |||||||    
T  2125309 tggtgtggcagctgccacaccatgtttcacactaactccgccc 2125267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 28211746 - 28211788
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgccc 369  Q
    |||||||||||||||||||||||||||||| |||  |||||||    
T  28211746 tggtgtggcagctgccacaccatgtttcacactaactccgccc 28211788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 28211788 - 28211746
Alignment:
Q  306 gggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||  ||| ||||||||||||||||||||||||||||||    
T  28211788 gggcggagttagtgtgaaacatggtgtggcagctgccacacca 28211746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 22418554 - 22418598
Alignment:
Q  304 aggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||||| ||  ||||||||||||||||||| ||||||||||    
T  22418554 aggggcggatctactgtgaaacatggtgtggcagttgccacacca 22418598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 22418598 - 22418554
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 371  Q
    |||||||||| |||||||||||||||||||  || ||||||||||    
T  22418598 tggtgtggcaactgccacaccatgtttcacagtagatccgcccct 22418554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 327 - 370
Target Start/End: Original strand, 18431715 - 18431758
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18431715 tggtgtggcagctgccacaccatgtttcactctacatccgcccc 18431758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 18431758 - 18431715
Alignment:
Q  305 ggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18431758 ggggcggatgtagagtgaaacatggtgtggcagctgccacacca 18431715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 22788462 - 22788506
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 371  Q
    ||||||||||| |||||||||||||||||| || |||||||||||    
T  22788462 tggtgtggcagttgccacaccatgtttcacactccatccgcccct 22788506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 22788506 - 22788462
Alignment:
Q  304 aggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    ||||||||||| || |||||||||||||||||| |||||||||||    
T  22788506 aggggcggatggagtgtgaaacatggtgtggcaactgccacacca 22788462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 33403425 - 33403469
Alignment:
Q  304 aggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||||| || | |||||||||||||||||| ||||||||||    
T  33403425 aggggcggatctacactgaaacatggtgtggcagttgccacacca 33403469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 33403469 - 33403425
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 371  Q
    |||||||||| |||||||||||||||||| | || ||||||||||    
T  33403469 tggtgtggcaactgccacaccatgtttcagtgtagatccgcccct 33403425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 37187912 - 37187956
Alignment:
Q  304 aggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||||| ||  ||||||||||||||||||| ||||||||||    
T  37187912 aggggcggatctactgtgaaacatggtgtggcagttgccacacca 37187956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 37187956 - 37187912
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 371  Q
    |||||||||| |||||||||||||||||||  || ||||||||||    
T  37187956 tggtgtggcaactgccacaccatgtttcacagtagatccgcccct 37187912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 5014173 - 5014215
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgccc 369  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5014173 tggtgtggcagctgccacaccatgtttcactctacatccgccc 5014215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 5014215 - 5014173
Alignment:
Q  306 gggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5014215 gggcggatgtagagtgaaacatggtgtggcagctgccacacca 5014173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 16692963 - 16693007
Alignment:
Q  304 aggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    ||||||||||  || |||||||||||||||| |||||||||||||    
T  16692963 aggggcggattgagtgtgaaacatggtgtggtagctgccacacca 16693007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 16693007 - 16692963
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 371  Q
    ||||||||||||| |||||||||||||||| ||  ||||||||||    
T  16693007 tggtgtggcagctaccacaccatgtttcacactcaatccgcccct 16692963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 16916446 - 16916490
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 371  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  16916446 tggtgtggcagctgacacaccatgtttcactctacatccgcccct 16916490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 16916490 - 16916446
Alignment:
Q  304 aggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  16916490 aggggcggatgtagagtgaaacatggtgtgtcagctgccacacca 16916446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 46437312 - 46437349
Alignment:
Q  309 cggatgtagagtgaaacatggtgtggcagctgccacac 346  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46437312 cggatgtagagtgaaacatggtgtggcagctgccacac 46437349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 46437349 - 46437312
Alignment:
Q  329 gtgtggcagctgccacaccatgtttcactctacatccg 366  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46437349 gtgtggcagctgccacaccatgtttcactctacatccg 46437312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 38663006 - 38663048
Alignment:
Q  306 gggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||  ||| ||||||||||||||||||||||||||||||    
T  38663006 gggcggagttagtgtgaaacatggtgtggcagctgccacacca 38663048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 38663048 - 38663006
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgccc 369  Q
    |||||||||||||||||||||||||||||| |||  |||||||    
T  38663048 tggtgtggcagctgccacaccatgtttcacactaactccgccc 38663006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 28998021 - 28998065
Alignment:
Q  304 aggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||||| ||  ||||||||||||||||||| ||||||||||    
T  28998021 aggggcggatctactgtgaaacatggtgtggcagttgccacacca 28998065  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 28998065 - 28998021
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 371  Q
    |||||||||| |||||||||||||||||||  || ||||||||||    
T  28998065 tggtgtggcaactgccacaccatgtttcacagtagatccgcccct 28998021  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 28535194 - 28535238
Alignment:
Q  304 aggggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  28535194 aggggcggatggagtgtgaaacatggtgtggcagctgccacacca 28535238  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 28535238 - 28535194
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgcccct 371  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  28535238 tggtgtggcagctgccacaccatgtttcacactccatccgcccct 28535194  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 424836 - 424878
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgccc 369  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  424836 tggtgtggcagctgccacaccatgtttcaatgtacatccgccc 424878  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 424878 - 424836
Alignment:
Q  306 gggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  424878 gggcggatgtacattgaaacatggtgtggcagctgccacacca 424836  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 18113838 - 18113880
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgccc 369  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  18113838 tggtgtggcaactgccacaccatgtttcaatgtacatccgccc 18113880  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 18113880 - 18113838
Alignment:
Q  306 gggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    ||||||||||| | |||||||||||||||||| ||||||||||    
T  18113880 gggcggatgtacattgaaacatggtgtggcagttgccacacca 18113838  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 25634446 - 25634488
Alignment:
Q  327 tggtgtggcagctgccacaccatgtttcactctacatccgccc 369  Q
    |||||||||||||||||||||||||||||| |||  |||||||    
T  25634446 tggtgtggcagctgccacaccatgtttcacactaactccgccc 25634488  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 25634488 - 25634446
Alignment:
Q  306 gggcggatgtagagtgaaacatggtgtggcagctgccacacca 348  Q
    |||||||  ||| ||||||||||||||||||||||||||||||    
T  25634488 gggcggagttagtgtgaaacatggtgtggcagctgccacacca 25634446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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