View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_35 (Length: 284)
Name: NF20261_high_35
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 36075568 - 36075829
Alignment:
| Q |
1 |
gaaagttaaatgcctcataatctcaaccataataatgatgaaattgatgcttatttctgctggtcttggatttagaacctcaaaatttaagagaacttga |
100 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075568 |
gaaagttaaatgccttat---ctcaaccataataatgatgaaattgatgctt---tctgctggtcttggatttagaacctcaaaatttaagagaacttga |
36075661 |
T |
|
| Q |
101 |
tacatttctagccactggtcttggatttataagctcgatcttaagggatacatttcccacatacatacacaactgaacataaatcttcagttttttcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075662 |
tacatttctagccactggtcttggatttataagctcgatcttaacggatacatttcccacatacatacacaactgaacataaatcttcagttttttcaca |
36075761 |
T |
|
| Q |
201 |
caatctgaaaaattgaatagaatgactcgtttattgccaacaaccatatttg-aaagatgtgattaat |
267 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
36075762 |
caatctgaataattgaatagaatgactcgtttattgccaacaaccataattgaaaagatgtgattaat |
36075829 |
T |
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