View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20261_high_38 (Length: 276)
Name: NF20261_high_38
Description: NF20261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20261_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 30290491 - 30290748
Alignment:
| Q |
1 |
atactcactgtgttgaacccgaacgacagaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgcttatttggctaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30290491 |
atactcactgtgttgaacccgaacgacagaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgcttatttggctaacc |
30290590 |
T |
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| Q |
101 |
gagctgacaacgaggaccttagagtattagatcttgccatccccgttaacaggcctggtcaatttcaggtaaaatggcattgttattttttctcatatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30290591 |
gagctgacaacgaggaccttagagtattagatcttgccatccccgttaacaggcctggtcaatttcaggtaaaatggcattgttactttttctcatatca |
30290690 |
T |
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| Q |
201 |
ctcccagtcatgtatacatattacatttttaaattgcggtatgcaacagcgtctagag |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30290691 |
ctcccagtcatgtatacatattacatttttaaattgcggtatgcaacagcatctagag |
30290748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 30297996 - 30298253
Alignment:
| Q |
1 |
atactcactgtgttgaacccgaacgacagaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgcttatttggctaacc |
100 |
Q |
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|||||||| ||||||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30297996 |
atactcaccgtgttgaacccagacaacagaaactccttcaaccttgaacgcggtgatactatcaaactccctgccggcagcattgcttatttggctaacc |
30298095 |
T |
|
| Q |
101 |
gagctgacaacgaggaccttagagtattagatcttgccatccccgttaacaggcctggtcaatttcaggtaaaatggcattgttattttttctcatatca |
200 |
Q |
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||| |||||| ||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||| | ||| |||||||||||||| |
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| T |
30298096 |
gagatgacaatgaggatcttagagtattagatcttgccatccccgttaacagacccggtaaatttcaggtaatatggcactcttactttttctcatatca |
30298195 |
T |
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| Q |
201 |
ctcccagtcatgtatacatattacatttttaaattgcggtatgcaacagcgtctagag |
258 |
Q |
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|||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
30298196 |
ctcccaatcatgtattcatattaaggttttaaattgcggtatgcaacagcgtctagag |
30298253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 30314049 - 30314268
Alignment:
| Q |
1 |
atactcactgtgttgaacccgaacgacagaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgcttatttggctaacc |
100 |
Q |
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|||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30314049 |
atactcacggtgttgaacccaaacaatagaaactccttcaaccttgaacgtggtgataccatcaaactccctgctggcagcattgcttatttggctaacc |
30314148 |
T |
|
| Q |
101 |
gagctgacaacgaggaccttagagtattagatcttgccatccccgttaacaggcctggtcaatttcaggtaaaatggcattgttattttttctcatatca |
200 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||| |||||| |||||||||||||| |
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| T |
30314149 |
gagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggcgttgttactttttctcatatca |
30314248 |
T |
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| Q |
201 |
ctcccagtcatgtatacata |
220 |
Q |
| |
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|| |||||||||||||||| |
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| T |
30314249 |
ttctcagtcatgtatacata |
30314268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 30303180 - 30303377
Alignment:
| Q |
1 |
atactcactgtgttgaacccgaacgacagaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgcttatttggctaacc |
100 |
Q |
| |
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|||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30303180 |
atactcacggtgttgaacccaaacaatagaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgcttatttggctaacc |
30303279 |
T |
|
| Q |
101 |
gagctgacaacgaggaccttagagtattagatcttgccatccccgttaacaggcctggtcaatttcaggtaaaatggcattgttattttttctcatat |
198 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
30303280 |
gagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggcgatgttactttttctcatat |
30303377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 30285527 - 30285698
Alignment:
| Q |
1 |
atactcactgtgttgaacccgaacgacagaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgcttatttggctaacc |
100 |
Q |
| |
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||||| || ||||||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||| || | | ||| ||| |||||||||| |
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| T |
30285527 |
atactgacggtgttgaaccccaacaatagaaactccttcaaccttgagcgtggtgataccatcaaactccctgctggaacccttggttacttggctaacc |
30285626 |
T |
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| Q |
101 |
gagctgacaacgaggaccttagagtattagatcttgccatccccgttaacaggcctggtcaatttcaggtaa |
172 |
Q |
| |
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||| ||||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30285627 |
gagatgacaacaaggatcttagagtcttagatcttgccatccccgttaacaggcccggtcaatttcaggtaa |
30285698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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